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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202028 (41 seq.)
>W1711385324
MEEB01000212
Alphaproteobacteria
Hyphomicrobium sp. SCN 65-11 [MEEB]
13289
13213
-
His
GTG
[ENA]
¡û
>W1711709235
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3842771
3842695
-
His
GTG
[ENA]
¡û
>W1711709263
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
464431
464507
+
His
GTG
[ENA]
¡û
>W1712104585
NIPV01000018
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
47362
47286
-
His
GTG
[ENA]
¡û
>W1712104653
NIPW01000058
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
28307
28383
+
His
GTG
[ENA]
¡û
>W1712104690
NIPX01000037
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
29000
29076
+
His
GTG
[ENA]
¡û
>W131242033
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
516028
515952
-
His
GTG
[ENA]
¡û
>WENV180040841
LLBZ010016904
[LLBZ] soil metagenome; soil from tomato rhizosphere
3280
3204
-
His
GTG
[ENA]
¢þ
>WENV181168931
OEIV010000023
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17301
17225
-
His
GTG
[ENA]
¢þ
>WENV181222993
OFDC01000997
[OFDC] hot springs metagenome; Water
1042
1118
+
His
GTG
[ENA]
¢þ
>WENV181227072
OFDN01001513
[OFDN] hot springs metagenome; Water
3701
3625
-
His
GTG
[ENA]
¢þ
>WENV181233605
OFET01000015
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1447
1523
+
His
GTG
[ENA]
¢þ
>WENV181412181
OGCI01093718
[OGCI] hot springs metagenome; Hot spring water
423
347
-
His
GTG
[ENA]
¢þ
>W141189630
AYNO01000014
Alphaproteobacteria
Rhodobacter sp. CACIA14H1 [AYNO]
7419
7495
+
His
GTG
[ENA]
¡û
>W141277313
JAEM01000021
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
31428
31352
-
His
GTG
[ENA]
¡û
>WENV183686397
ORMF010994334
[ORMF] groundwater metagenome; groundwater
2365
2441
+
His
GTG
[ENA]
¢þ
>WENV183728908
PJTQ01001092
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
4022
3946
-
His
GTG
[ENA]
¢þ
>WENV183740267
PJUF01000890
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3061
3137
+
His
GTG
[ENA]
¢þ
>WENV170649180
JRHI01008965
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
2677
2753
+
His
GTG
[ENA]
¢þ
>WENV170957839
MKWU01000216
[MKWU] sponge metagenome;
11648
11572
-
His
GTG
[ENA]
¢þ
>C181081643
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1157160
1157236
+
His
GTG
-
¡û
>W1910232026
FPEI01000006
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
479661
479585
-
His
GTG
[ENA]
¡û
>W1910808392
MUAV01000007
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
122790
122866
+
His
GTG
[ENA]
¡û
>W1911495004
OBMN01000001
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
116564
116640
+
His
GTG
[ENA]
¡û
>W1810195568
PKRQ01000005
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
73793
73717
-
His
GTG
[ENA]
¡û
>W1810351371
PVEP01000003
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
334924
335000
+
His
GTG
[ENA]
¡û
>W1810356742
PVND01000003
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
410343
410267
-
His
GTG
[ENA]
¡û
>W1810486763
QAYC01000008
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
75741
75665
-
His
GTG
[ENA]
¡û
>W1810721620
QNSD01000003
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
29863
29939
+
His
GTG
[ENA]
¡û
>W1810750741
QOZU01000042
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
788
864
+
His
GTG
[ENA]
¡û
>C11111806
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1944904
1944980
+
His
GTG
[Ensembl]
¡û
>C11111871
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2230599
2230675
+
His
GTG
[Ensembl]
¡û
>C161001439
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
1144877
1144953
+
His
GTG
[Ensembl]
¡û
>C161047264
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2335403
2335479
+
His
GTG
-
¡û
>C161087742
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3594396
3594320
-
His
GTG
-
¡û
>C161099991
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2334321
2334397
+
His
GTG
-
¡û
>W1710520687
FNFV01000002
Alphaproteobacteria
Meinhardsimonia xiamenensis xiamenense [FNFV]
195517
195593
+
His
GTG
[ENA]
¡û
>W1710571563
FOWA01000017
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
38559
38635
+
His
GTG
[ENA]
¡û
>W1710595084
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
5861
5937
+
His
GTG
[ENA]
¡û
>W1710599115
FTOM01000001
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
116564
116640
+
His
GTG
[ENA]
¡û
>W1710608111
FXAQ01000004
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
44775
44851
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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