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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202065 (34 seq.)
>W1711069418
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
274973
274897
-
Pro
GGG
[ENA]
¡û
>C171115155
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1366741
1366665
-
Pro
GGG
-
¡û
>W131046824
AMSR01000017
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
23209
23133
-
Pro
GGG
[ENA]
¡û
>C027934
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1947869
1947945
+
Pro
GGG
[Ensembl]
¡û
>WENV180020402
FTCZ01002981
[FTCZ] metagenome; soil
1768
1692
-
Pro
GGG
[ENA]
¢þ
>WENV180310850
OBJT01036312
[OBJT] soil metagenome; soil
714
638
-
Pro
GGG
[ENA]
¢þ
>WENV180690217
OCZS010000782
[OCZS] soil metagenome; soil
8091
8015
-
Pro
GGG
[ENA]
¢þ
>WENV181155722
OEID01382958
[OEID] soil metagenome; soil
130
54
-
Pro
GGG
[ENA]
¢þ
>WENV181164213
OEIR01060826
[OEIR] soil metagenome; soil
170
94
-
Pro
GGG
[ENA]
¢þ
>WENV181184416
OEKC01000152
[OEKC] metagenome; 1998
6420
6344
-
Pro
GGG
[ENA]
¢þ
>WENV181221864
OFCZ01000410
[OFCZ] metagenome; soil
330
254
-
Pro
GGG
[ENA]
¢þ
>WENV170575069
FLYN01028749
[FLYN] hot springs metagenome; Sediment
3
79
+
Pro
GGG
[ENA]
¢þ
>C181088921
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1956208
1956284
+
Pro
GGG
-
¡û
>C181089248
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1950209
1950285
+
Pro
GGG
-
¡û
>C191145595
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1947815
1947891
+
Pro
GGG
-
¡û
>C191145646
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1947815
1947891
+
Pro
GGG
-
¡û
>C191145697
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1947815
1947891
+
Pro
GGG
-
¡û
>W141564488
JIAU01000008
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
80045
80121
+
Pro
GGG
[ENA]
¡û
>W141779096
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1419564
1419640
+
Pro
GGG
[ENA]
¡û
>W1910182427
BJMW01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
30357
30433
+
Pro
GGG
[ENA]
¡û
>W1910182460
BJMX01000003
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
145039
144963
-
Pro
GGG
[ENA]
¡û
>C141008812
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1452562
1452486
-
Pro
GGG
[Ensembl]
¡û
>W1911765796
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
389154
389078
-
Pro
GGG
[ENA]
¡û
>W1911783356
QXTF01000001
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
900974
901050
+
Pro
GGG
[ENA]
¡û
>W1810538543
QDFY01000005
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
156935
156859
-
Pro
GGG
[ENA]
¡û
>W1810579404
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1721438
1721362
-
Pro
GGG
[ENA]
¡û
>W1810586276
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
1210501
1210425
-
Pro
GGG
[ENA]
¡û
>W1810787271
QRDP01000004
Alphaproteobacteria
Parasphingopyxis lamellibrachiae DSM 26725 [QRDP]
2566045
2565969
-
Pro
GGG
[ENA]
¡û
>C151004614
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1451649
1451573
-
Pro
GGG
[Ensembl]
¡û
>C151004665
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1452348
1452272
-
Pro
GGG
[Ensembl]
¡û
>C10114598
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
1454596
1454520
-
Pro
GGG
[Ensembl]
¡û
>C11124238
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1433792
1433716
-
Pro
GGG
[Ensembl]
¡û
>C121003158
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1467515
1467439
-
Pro
GGG
[Ensembl]
¡û
>W1610909946
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
274973
274897
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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