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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20227 (64 seq.)
>W1710872025
LMLR01000010
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
40769
40859
+
Ser
TGA
[ENA]
¡û
>W1710875352
LMOI01000002
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
47095
47185
+
Ser
TGA
[ENA]
¡û
>W1710876286
LMPC01000012
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
52080
52170
+
Ser
TGA
[ENA]
¡û
>W1710880041
LMSB01000034
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
56072
56160
+
Ser
TGA
[ENA]
¡û
>W1710880253
LMSF01000006
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
49612
49700
+
Ser
TGA
[ENA]
¡û
>W1710880393
LMSI01000002
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
201417
201329
-
Ser
TGA
[ENA]
¡û
>W1710909449
LNQM01000007
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
48334
48424
+
Ser
TGA
[ENA]
¡û
>W1711184090
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
957900
957810
-
Ser
TGA
[ENA]
¡û
>W1711768844
MVDG01000074
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
218811
218723
-
Ser
TGA
[ENA]
¡û
>W1711853241
MYFE01000504
Actinomycetota
Arthrobacter globiformis [MYFE]
239
151
-
Ser
TGA
[ENA]
¡û
>C171040623
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
1946593
1946503
-
Ser
TGA
-
¡û
>C171091982
CP019304
Actinomycetota
Arthrobacter sp. QXT-31 [CP019304]
1533862
1533950
+
Ser
TGA
-
¡û
>W131089929
AOFD01000013
Actinomycetota
Arthrobacter nitrophenolicus SJCon [AOFD]
44367
44457
+
Ser
TGA
[ENA]
¡û
>W131172036
ARGQ01000030
Actinomycetota
Arthrobacter sp. 135MFCol5.1 [ARGQ]
94432
94522
+
Ser
TGA
[ENA]
¡û
>W131172160
ARGS01000038
Actinomycetota
Arthrobacter sp. 162MFSha1.1 [ARGS]
49655
49743
+
Ser
TGA
[ENA]
¡û
>C001028
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
733196
733106
-
Ser
TGA
[Ensembl]
¡û
>WENV180023421
FTHV01127296
[FTHV] metagenome; soil
11
99
+
Ser
TGA
[ENA]
¢þ
>WENV180023549
FTHY01105213
[FTHY] metagenome; soil
11
99
+
Ser
TGA
[ENA]
¢þ
>WENV180693395
OCZS011204255
[OCZS] soil metagenome; soil
154
242
+
Ser
TGA
[ENA]
¢þ
>WENV180694466
OCZS012333144
[OCZS] soil metagenome; soil
156
244
+
Ser
TGA
[ENA]
¢þ
>WENV181191337
OEPS010060052
[OEPS] soil metagenome; soil
268
356
+
Ser
TGA
[ENA]
¢þ
>W08008083
ABKU01000178
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [ABKU]
3231
3321
+
Ser
TGA
[ENA]
¡û
>W141213523
AZSB01000291
Actinomycetota
Arthrobacter sp. I3 [AZSB]
5819
5907
+
Ser
TGA
[ENA]
¡û
>W09102055
AAHG01000008
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
99623
99533
-
Ser
TGA
[ENA]
¡û
>C191164612
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
40382
40470
+
Ser
TGA
-
¡û
>C191174078
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
830258
830170
-
Ser
TGA
-
¡û
>C191188213
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
285128
285216
+
Ser
TGA
-
¡û
>C191188305
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
1231803
1231715
-
Ser
TGA
-
¡û
>C191188557
CP041198
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502770 [CP041198]
166546
166458
-
Ser
TGA
-
¡û
>W141565175
JIBJ01000001
Actinomycetota
Arthrobacter sp. 9MFCol3.1 [JIBJ]
48675
48763
+
Ser
TGA
[ENA]
¡û
>W141702019
JMLE01000011
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
48869
48959
+
Ser
TGA
[ENA]
¡û
>C09100292
CP001341
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [CP001341]
898232
898142
-
Ser
TGA
[Ensembl]
¡û
>W1810167364
PJIK01000018
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
47946
48034
+
Ser
TGA
[ENA]
¡û
>W1810167397
PJIL01000007
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
40461
40549
+
Ser
TGA
[ENA]
¡û
>W1810167950
PJIW01000021
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
48598
48510
-
Ser
TGA
[ENA]
¡û
>W1810171966
PJMB01000005
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
281481
281393
-
Ser
TGA
[ENA]
¡û
>W1810172012
PJMC01000008
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
49559
49647
+
Ser
TGA
[ENA]
¡û
>W1810534622
QDAE01000006
Actinomycetota
Arthrobacter sp. Bz4 [QDAE]
144720
144631
-
Ser
TGA
[ENA]
¡û
>W1810569960
QEHL01000004
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
53422
53510
+
Ser
TGA
[ENA]
¡û
>W1810677263
QKMO01000010
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
67907
67819
-
Ser
TGA
[ENA]
¡û
>W1810695534
QLNP01000003
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
45819
45907
+
Ser
TGA
[ENA]
¡û
>W1810789467
QRGQ01000036
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
41108
41020
-
Ser
TGA
[ENA]
¡û
>W1510018536
BBUE01000051
Actinomycetota
Arthrobacter sp. Hiyo6 [BBUE]
2536
2446
-
Ser
TGA
[ENA]
¡û
>W1511489616
JWTB01000017
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
52235
52145
-
Ser
TGA
[ENA]
¡û
>W1511523708
JYCN01000008
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
20478
20388
-
Ser
TGA
[ENA]
¡û
>W1511551609
JZTW01000002
Actinomycetota
Pseudarthrobacter chlorophenolicus Mor30.16 [JZTW]
21793
21883
+
Ser
TGA
[ENA]
¡û
>W1511685693
LFQH01000050
Actinomycetota
Arthrobacter sp. ZBG10 [LFQH]
40782
40694
-
Ser
TGA
[ENA]
¡û
>C161060719
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
1529347
1529437
+
Ser
TGA
[Ensembl]
¡û
>W121114192
ALPM01000052
Actinomycetota
Arthrobacter sp. TB 23 [ALPM]
6273
6183
-
Ser
TGA
[ENA]
¡û
>W121123800
BAEG01000047
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
50492
50580
+
Ser
TGA
[ENA]
¡û
>W1610515431
FMAZ01000006
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
48334
48424
+
Ser
TGA
[ENA]
¡û
>W1610734371
LMLR01000010
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
40769
40859
+
Ser
TGA
[ENA]
¡û
>W1610737698
LMOI01000002
Actinomycetota
Arthrobacter sp. Leaf137 [LMOI]
47095
47185
+
Ser
TGA
[ENA]
¡û
>W1610738632
LMPC01000012
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
52080
52170
+
Ser
TGA
[ENA]
¡û
>W1610742387
LMSB01000034
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
56072
56160
+
Ser
TGA
[ENA]
¡û
>W1610742599
LMSF01000006
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
49612
49700
+
Ser
TGA
[ENA]
¡û
>W1610742739
LMSI01000002
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
201417
201329
-
Ser
TGA
[ENA]
¡û
>W1610767808
LNQM01000007
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
48334
48424
+
Ser
TGA
[ENA]
¡û
>W1610989972
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
957900
957810
-
Ser
TGA
[ENA]
¡û
>W1710501121
FMAZ01000006
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
48334
48424
+
Ser
TGA
[ENA]
¡û
>W1710521079
FNGC01000008
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
48037
48127
+
Ser
TGA
[ENA]
¡û
>W1710521152
FNGD01000021
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
44493
44581
+
Ser
TGA
[ENA]
¡û
>W1710527668
FNLE01000003
Actinomycetota
Pseudarthrobacter chlorophenolicus [FNLE]
4289095
4289185
+
Ser
TGA
[ENA]
¡û
>W1710603512
FUZD01000005
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
170037
169949
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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