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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20237 (112 seq.)
>W1711174289
LWED01000006
Gammaproteobacteria
Shewanella baltica [LWED]
258
167
-
Ser
GCT
[ENA]
¡û
>W1711174297
LWED01000014
Gammaproteobacteria
Shewanella baltica [LWED]
117850
117759
-
Ser
GCT
[ENA]
¡û
>W1711621613
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
882824
882915
+
Ser
GCT
[ENA]
¡û
>C020679
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3645208
3645117
-
Ser
GCT
[Ensembl]
¡û
>C020685
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3644438
3644347
-
Ser
GCT
[Ensembl]
¡û
>C022527
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445268
1445359
+
Ser
GCT
[Ensembl]
¡û
>C022533
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445999
1446090
+
Ser
GCT
[Ensembl]
¡û
>C023291
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3176882
3176791
-
Ser
GCT
[Ensembl]
¡û
>C023297
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3176151
3176060
-
Ser
GCT
[Ensembl]
¡û
>w026299
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4111
4018
-
Ser
GCT
[ENA]
¡û
>w026293
ABAU01000023
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
4882
4789
-
Ser
GCT
[ENA]
¡û
>w024944
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
1156
1249
+
Ser
GCT
[ENA]
¡û
>w024938
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
385
478
+
Ser
GCT
[ENA]
¡û
>w022860
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7139
7046
-
Ser
GCT
[ENA]
¡û
>w022854
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7870
7777
-
Ser
GCT
[ENA]
¡û
>w021064
AAVJ01000001
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
299236
299143
-
Ser
GCT
[ENA]
¡û
>w021061
AAVJ01000001
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
299602
299509
-
Ser
GCT
[ENA]
¡û
>w021055
AAVJ01000001
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
300234
300141
-
Ser
GCT
[ENA]
¡û
>w018679
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7195
7102
-
Ser
GCT
[ENA]
¡û
>w018673
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7968
7875
-
Ser
GCT
[ENA]
¡û
>C08008664
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3722587
3722499
-
Ser
GCT
[Ensembl]
¡û
>C08008670
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3721816
3721728
-
Ser
GCT
[Ensembl]
¡û
>W141227909
BALN01000018
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
82461
82552
+
Ser
GCT
[ENA]
¡û
>W141227920
BALN01000028
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
121
212
+
Ser
GCT
[ENA]
¡û
>C08010128
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1456724
1456815
+
Ser
GCT
[Ensembl]
¡û
>C08010134
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1457356
1457447
+
Ser
GCT
[Ensembl]
¡û
>C08010137
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
1457722
1457813
+
Ser
GCT
[Ensembl]
¡û
>C08008768
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
3843448
3843360
-
Ser
GCT
[Ensembl]
¡û
>C08008774
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
3842675
3842587
-
Ser
GCT
[Ensembl]
¡û
>C08009817
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1503124
1503215
+
Ser
GCT
[Ensembl]
¡û
>C08009823
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1503759
1503850
+
Ser
GCT
[Ensembl]
¡û
>C08009826
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
1504123
1504214
+
Ser
GCT
[Ensembl]
¡û
>W141276557
JADX01000006
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
98222
98313
+
Ser
GCT
[ENA]
¡û
>W141276558
JADX01000007
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
2
93
+
Ser
GCT
[ENA]
¡û
>W141277076
JAEH01000066
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
4238
4329
+
Ser
GCT
[ENA]
¡û
>W141277723
JAEU01000017
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
94
3
-
Ser
GCT
[ENA]
¡û
>WENV170022199
BCQK01001534
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
352
443
+
Ser
GCT
[ENA]
¢þ
>WENV170022203
BCQK01001534
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
757
848
+
Ser
GCT
[ENA]
¢þ
>C181016852
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4160558
4160467
-
Ser
GCT
-
¡û
>C181016858
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4159787
4159696
-
Ser
GCT
-
¡û
>C181061334
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2993753
2993662
-
Ser
GCT
-
¡û
>C181061339
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
2993205
2993114
-
Ser
GCT
-
¡û
>C181075013
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3299008
3299099
+
Ser
GCT
-
¡û
>C181075019
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3299780
3299871
+
Ser
GCT
-
¡û
>C181164561
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
489031
488940
-
Ser
GCT
-
¡û
>C181164567
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
488260
488169
-
Ser
GCT
-
¡û
>C181165416
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883223
3883314
+
Ser
GCT
-
¡û
>C181165422
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883954
3884045
+
Ser
GCT
-
¡û
>C181167930
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3494076
3493985
-
Ser
GCT
-
¡û
>C181167936
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3493305
3493214
-
Ser
GCT
-
¡û
>W09102871
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
313
404
+
Ser
GCT
[ENA]
¡û
>W09102877
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
1083
1174
+
Ser
GCT
[ENA]
¡û
>W09103918
AALB01000025
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
2020
1929
-
Ser
GCT
[ENA]
¡û
>W09103924
AALB01000025
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
1289
1198
-
Ser
GCT
[ENA]
¡û
>W09104266
AALN01000007
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
22395
22304
-
Ser
GCT
[ENA]
¡û
>W09104272
AALN01000007
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
21664
21573
-
Ser
GCT
[ENA]
¡û
>C191155961
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1336836
1336927
+
Ser
GCT
-
¡û
>C191155966
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
1337358
1337449
+
Ser
GCT
-
¡û
>C191187087
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3337399
3337308
-
Ser
GCT
-
¡û
>C191187095
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3336562
3336471
-
Ser
GCT
-
¡û
>C191187220
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2977924
2977833
-
Ser
GCT
-
¡û
>C191187225
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
2977377
2977286
-
Ser
GCT
-
¡û
>C191206473
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588934
3588843
-
Ser
GCT
-
¡û
>C191206479
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588163
3588072
-
Ser
GCT
-
¡û
>C09109150
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1480780
1480871
+
Ser
GCT
[Ensembl]
¡û
>C09109156
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1481551
1481642
+
Ser
GCT
[Ensembl]
¡û
>C09109792
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
1392699
1392790
+
Ser
GCT
[Ensembl]
¡û
>C09109798
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
1393325
1393416
+
Ser
GCT
[Ensembl]
¡û
>W1911581902
PGVH01000027
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
10623
10532
-
Ser
GCT
[ENA]
¡û
>W1911581907
PGVH01000027
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
10089
9998
-
Ser
GCT
[ENA]
¡û
>W1911809460
QYYH01000034
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
36198
36289
+
Ser
GCT
[ENA]
¡û
>W1911809465
QYYH01000034
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
36720
36811
+
Ser
GCT
[ENA]
¡û
>W1810005556
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
288167
288076
-
Ser
GCT
[ENA]
¡û
>W1810005562
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
287547
287456
-
Ser
GCT
[ENA]
¡û
>W1810005565
BFBQ01000001
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
287183
287092
-
Ser
GCT
[ENA]
¡û
>W1810154345
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
92371
92280
-
Ser
GCT
[ENA]
¡û
>W1810423008
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2318982
2318891
-
Ser
GCT
[ENA]
¡û
>W1810423014
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2318215
2318124
-
Ser
GCT
[ENA]
¡û
>W1810721538
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
197074
197165
+
Ser
GCT
[ENA]
¡û
>W1810721545
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
197972
198063
+
Ser
GCT
[ENA]
¡û
>W10119032
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93691
93600
-
Ser
GCT
[ENA]
¡û
>W10119038
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
92918
92827
-
Ser
GCT
[ENA]
¡û
>W10126057
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
342648
342557
-
Ser
GCT
[ENA]
¡û
>W10126063
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
341886
341795
-
Ser
GCT
[ENA]
¡û
>W10126361
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469090
469181
+
Ser
GCT
[ENA]
¡û
>W10126367
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469852
469943
+
Ser
GCT
[ENA]
¡û
>C11119383
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485169
1485260
+
Ser
GCT
[Ensembl]
¡û
>C11119389
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485931
1486022
+
Ser
GCT
[Ensembl]
¡û
>W1511366789
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
127213
127122
-
Ser
GCT
[ENA]
¡û
>W1511366797
JSFF01000005
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
126317
126226
-
Ser
GCT
[ENA]
¡û
>C11119525
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3741291
3741200
-
Ser
GCT
[Ensembl]
¡û
>C11119531
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3740521
3740430
-
Ser
GCT
[Ensembl]
¡û
>C11119623
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3791712
3791621
-
Ser
GCT
[Ensembl]
¡û
>C11119629
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3790939
3790848
-
Ser
GCT
[Ensembl]
¡û
>C11121560
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3251365
3251274
-
Ser
GCT
[Ensembl]
¡û
>C11121566
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3250634
3250543
-
Ser
GCT
[Ensembl]
¡û
>W11125204
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93691
93600
-
Ser
GCT
[ENA]
¡û
>W11125210
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
92918
92827
-
Ser
GCT
[ENA]
¡û
>W11133318
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
342648
342557
-
Ser
GCT
[ENA]
¡û
>W11133324
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
341886
341795
-
Ser
GCT
[ENA]
¡û
>W11133622
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469090
469181
+
Ser
GCT
[ENA]
¡û
>W11133628
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469852
469943
+
Ser
GCT
[ENA]
¡û
>W11178444
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
529465
529374
-
Ser
GCT
[ENA]
¡û
>W11178477
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
575
484
-
Ser
GCT
[ENA]
¡û
>W1610072064
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
162590
162681
+
Ser
GCT
[ENA]
¡û
>W1610072070
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
163321
163412
+
Ser
GCT
[ENA]
¡û
>W1610982602
LWED01000006
Gammaproteobacteria
Shewanella baltica [LWED]
258
167
-
Ser
GCT
[ENA]
¡û
>W1610982610
LWED01000014
Gammaproteobacteria
Shewanella baltica [LWED]
117850
117759
-
Ser
GCT
[ENA]
¡û
>W1710069266
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
162590
162681
+
Ser
GCT
[ENA]
¡û
>W1710069272
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
163321
163412
+
Ser
GCT
[ENA]
¡û
>W1710597911
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
293963
294054
+
Ser
GCT
[ENA]
¡û
>W1710597914
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
294354
294445
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK