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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202910 (18 seq.)
>W131167261
ARDD01000003
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
122
198
+
Asn
GTT
[ENA]
¡û
>W131167286
ARDD01000006
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
162688
162612
-
Asn
GTT
[ENA]
¡û
>W131167293
ARDD01000011
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
189
265
+
Asn
GTT
[ENA]
¡û
>W131167297
ARDD01000012
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
56063
55987
-
Asn
GTT
[ENA]
¡û
>W131167299
ARDD01000020
Fusobacteriota
Leptotrichia shahii DSM 19757 [ARDD]
169
245
+
Asn
GTT
[ENA]
¡û
>WENV180797157
ODJB01033307
[ODJB] human metagenome; G_DNA_Supragingival plaque
490
566
+
Asn
GTT
[ENA]
¢þ
>WENV180875400
ODLQ01135879
[ODLQ] human metagenome; G_DNA_Tongue dorsum
87
163
+
Asn
GTT
[ENA]
¢þ
>WENV180944859
ODUC01042363
[ODUC] human metagenome; G_DNA_Supragingival plaque
807
731
-
Asn
GTT
[ENA]
¢þ
>WENV180975910
ODUY01029952
[ODUY] human metagenome; G_DNA_Supragingival plaque
837
913
+
Asn
GTT
[ENA]
¢þ
>WENV180983593
ODVF01021256
[ODVF] human metagenome; G_DNA_Supragingival plaque
1397
1321
-
Asn
GTT
[ENA]
¢þ
>WENV180999842
ODVT01081340
[ODVT] human metagenome; G_DNA_Buccal mucosa
83
7
-
Asn
GTT
[ENA]
¢þ
>WENV181050162
ODYD01007558
[ODYD] human metagenome; G_DNA_Supragingival plaque
738
662
-
Asn
GTT
[ENA]
¢þ
>WENV181084275
OEAV01124214
[OEAV] human metagenome; G_DNA_Supragingival plaque
282
358
+
Asn
GTT
[ENA]
¢þ
>C181020482
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
793361
793437
+
Asn
GTT
-
¡û
>C181020483
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
814638
814714
+
Asn
GTT
-
¡û
>C181020486
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
824808
824884
+
Asn
GTT
-
¡û
>C181020511
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
1141931
1142007
+
Asn
GTT
-
¡û
>C181020518
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
591167
591091
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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