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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203126 (5 seq.)
>W131043243
AMPG01000001
Actinomycetota
Candidatus Microthrix parvicella parvicella Bio17-1 [AMPG]
1558043
1557969
-
Ala
TGC
[ENA]
¡û
>W131242318
CANL01000067
Actinomycetota
Candidatus Microthrix parvicella parvicella RN1 [CANL]
59069
58993
-
Ala
TGC
[ENA]
¡û
>WENV181189504
OEOF01064004
[OEOF] activated sludge metagenome; Activated Sludge
296
370
+
Ala
TGC
[ENA]
¢þ
>WENV170553846
CXWK01034209
[CXWK] wastewater metagenome; activated sludge
18299
18225
-
Ala
TGC
[ENA]
¢þ
>WENV170976867
MTKZ01013570
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1205
1131
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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