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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203131 (49 seq.)
>C173001513
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
487850
487926
+
Arg
CCG
-
¡û
>C173001515
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
542853
542929
+
Arg
CCG
-
¡û
>C028091
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
628819
628895
+
Arg
CCG
[Ensembl]
¡û
>C028146
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
796830
796754
-
Arg
CCG
[Ensembl]
¡û
>C08012551
AM260525
Alphaproteobacteria
Bartonella tribocorum CIP 105476 type strain:506 [AM260525]
1009656
1009732
+
Arg
CCG
[Ensembl]
¡û
>WENV170209028
CEPV01028069
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1121
1197
+
Arg
CCG
[ENA]
¢þ
>WENV170809671
MDSW01136228
[MDSW] marine metagenome; seawater
24907
24983
+
Arg
CCG
[ENA]
¢þ
>CL170200027
CP015521
Alphaproteobacteria
Sphingomonas sp. NIC1 [CP015521]
2209861
2209937
+
Arg
CCG
[Ensembl]
¡û
>C183000641
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
550403
550479
+
Arg
CCG
-
¡û
>C193002127
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
3576126
3576050
-
Arg
CCG
-
¡û
>C193003592
LR134527
Alphaproteobacteria
Bartonella elizabethae NCTC12898 [LR134527]
904749
904673
-
Arg
CCG
-
¡û
>C193003594
LR134529
Alphaproteobacteria
Bartonella vinsonii NCTC12905 [LR134529]
786330
786406
+
Arg
CCG
-
¡û
>W09300096
AANF01000002
Alphaproteobacteria
Bartonella bacilliformis KC583 [AANF]
371744
371820
+
Arg
CCG
[ENA]
¡û
>W143000305
AHPC01000001
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
545210
545286
+
Arg
CCG
[ENA]
¡û
>W143000306
AHPD01000004
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
5974
5898
-
Arg
CCG
[ENA]
¡û
>W143000307
AHPE01000020
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
5891
5815
-
Arg
CCG
[ENA]
¡û
>W143000308
AHPF01000011
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
545196
545272
+
Arg
CCG
[ENA]
¡û
>W143001406
ASIT01000009
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
320696
320772
+
Arg
CCG
[ENA]
¡û
>W143001407
ASIU01000007
Alphaproteobacteria
Bartonella bacilliformis Cond044 [ASIU]
376170
376246
+
Arg
CCG
[ENA]
¡û
>W143001408
ASIV01000004
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
318368
318444
+
Arg
CCG
[ENA]
¡û
>W143001409
ASIW01000007
Alphaproteobacteria
Bartonella bacilliformis Peru38 [ASIW]
370155
370231
+
Arg
CCG
[ENA]
¡û
>W143001411
ASIY01000007
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
374308
374384
+
Arg
CCG
[ENA]
¡û
>W143001412
ASIZ01000008
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
322272
322348
+
Arg
CCG
[ENA]
¡û
>W143004477
AZZV01000001
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
46355
46279
-
Arg
CCG
[ENA]
¡û
>W143004481
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
544042
544118
+
Arg
CCG
[ENA]
¡û
>W143005476
CALU01000002
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
73046
73122
+
Arg
CCG
[ENA]
¡û
>W143005996
CCBL010000003
Alphaproteobacteria
Bartonella doshiae [CCBL]
34934
34858
-
Arg
CCG
[ENA]
¡û
>W143006284
JACX01000006
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
71951
71875
-
Arg
CCG
[ENA]
¡û
>W143006285
JACY01000005
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
158362
158286
-
Arg
CCG
[ENA]
¡û
>W143006390
JAGY01000009
Alphaproteobacteria
Bartonella doshiae ATCC 700133 [JAGY]
34880
34804
-
Arg
CCG
[ENA]
¡û
>W143014713
JHPQ01000003
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
260624
260548
-
Arg
CCG
[ENA]
¡û
>W143006077
CCNE01000010
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
237177
237101
-
Arg
CCG
[ENA]
¡û
>W1930022399
NJPP01000008
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
19658
19734
+
Arg
CCG
[ENA]
¡û
>W1930029144
NOXS01000035
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
73355
73431
+
Arg
CCG
[ENA]
¡û
>W1930030737
NSGG01000024
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
16650
16574
-
Arg
CCG
[ENA]
¡û
>C09300035
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
888919
888995
+
Arg
CCG
[Ensembl]
¡û
>W1830013651
QMBP01000003
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
467327
467403
+
Arg
CCG
[ENA]
¡û
>C153001391
HG969192
Alphaproteobacteria
Bartonella tribocorum BM1374166 [HG969192]
1010675
1010751
+
Arg
CCG
[Ensembl]
¡û
>W123001356
AILT01000004
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
6265
6189
-
Arg
CCG
[ENA]
¡û
>W123001358
AILU01000003
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
501365
501441
+
Arg
CCG
[ENA]
¡û
>W123001363
AILY01000008
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [AILY]
212043
212119
+
Arg
CCG
[ENA]
¡û
>W123001364
AILZ01000030
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
239599
239675
+
Arg
CCG
[ENA]
¡û
>W123001370
AIMF01000013
Alphaproteobacteria
Bartonella elizabethae F9251 [AIMF]
93137
93213
+
Arg
CCG
[ENA]
¡û
>W1630003667
CCND01000001
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
259907
259831
-
Arg
CCG
[ENA]
¡û
>W1630016663
LQXX01000008
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
55239
55315
+
Arg
CCG
[ENA]
¡û
>W1730003044
CCND01000001
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
259907
259831
-
Arg
CCG
[ENA]
¡û
>W1730009712
FOMB01000052
Alphaproteobacteria
Devosia psychrophila [FOMB]
3726
3802
+
Arg
CCG
[ENA]
¡û
>W1730019025
LQXX01000008
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
55239
55315
+
Arg
CCG
[ENA]
¡û
>W133001004
AMQK01000007
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
112368
112444
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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