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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203134 (30 seq.)
>W1710785478
LJHX01000009
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
23222
23298
+
His
GTG
[ENA]
¡û
>W1710863928
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
51120
51196
+
His
GTG
[ENA]
¡û
>W1710867298
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
50746
50822
+
His
GTG
[ENA]
¡û
>C171047033
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
390337
390413
+
His
GTG
-
¡û
>C171115122
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
25279
25355
+
His
GTG
-
¡û
>C171117078
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
892166
892090
-
His
GTG
-
¡û
>W131046815
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
262601
262525
-
His
GTG
[ENA]
¡û
>W131098380
AORL01000021
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
696862
696786
-
His
GTG
[ENA]
¡û
>W131196583
ASTM01000031
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
33133
33209
+
His
GTG
[ENA]
¡û
>WENV180020533
FTCZ01005642
[FTCZ] metagenome; soil
5966
5890
-
His
GTG
[ENA]
¢þ
>WENV180020625
FTCZ01007602
[FTCZ] metagenome; soil
339
415
+
His
GTG
[ENA]
¢þ
>C181081612
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
4465939
4465863
-
His
GTG
-
¡û
>C181088937
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1236447
1236371
-
His
GTG
-
¡û
>C181089264
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1236446
1236370
-
His
GTG
-
¡û
>C191145611
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1234045
1233969
-
His
GTG
-
¡û
>W1910182408
BJMW01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
26665
26741
+
His
GTG
[ENA]
¡û
>W1910182469
BJMX01000007
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
64713
64637
-
His
GTG
[ENA]
¡û
>C141008783
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
141152
141228
+
His
GTG
[Ensembl]
¡û
>W1911411133
NWUF01000002
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
247113
247189
+
His
GTG
[ENA]
¡û
>W1810858391
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
3113922
3113998
+
His
GTG
[ENA]
¡û
>C151004582
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
140927
141003
+
His
GTG
[Ensembl]
¡û
>C151004633
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
140927
141003
+
His
GTG
[Ensembl]
¡û
>C10114566
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
136086
136162
+
His
GTG
[Ensembl]
¡û
>C11124206
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
104236
104312
+
His
GTG
[Ensembl]
¡û
>C121003127
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
134313
134389
+
His
GTG
[Ensembl]
¡û
>W121034448
AHKO01000615
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
6133
6209
+
His
GTG
[ENA]
¡û
>W1610649284
LJHX01000009
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
23222
23298
+
His
GTG
[ENA]
¡û
>W1610726274
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
51120
51196
+
His
GTG
[ENA]
¡û
>W1610729644
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
50746
50822
+
His
GTG
[ENA]
¡û
>W1710602732
FUYM01000002
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
472381
472457
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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