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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203135 (18 seq.)
>C171115169
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
203754
203678
-
Arg
TCT
-
¡û
>W131046811
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
84876
84952
+
Arg
TCT
[ENA]
¡û
>WENV180020678
FTCZ01008224
[FTCZ] metagenome; soil
5885
5809
-
Arg
TCT
[ENA]
¢þ
>WENV180272596
OBEQ012395300
[OBEQ] groundwater metagenome; groundwater
2006
1930
-
Arg
TCT
[ENA]
¢þ
>WENV180343834
OBLK01108586
[OBLK] soil metagenome; Clay
279
355
+
Arg
TCT
[ENA]
¢þ
>WENV181165947
OEIS01316374
[OEIS] soil metagenome; soil
106
30
-
Arg
TCT
[ENA]
¢þ
>WENV181171479
OEIV010241426
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
45
121
+
Arg
TCT
[ENA]
¢þ
>C181088912
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1058721
1058797
+
Arg
TCT
-
¡û
>C181089239
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1058720
1058796
+
Arg
TCT
-
¡û
>C191145586
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1056319
1056395
+
Arg
TCT
-
¡û
>W1910182420
BJMW01000009
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
598
674
+
Arg
TCT
[ENA]
¡û
>W1910182475
BJMX01000011
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
2726
2650
-
Arg
TCT
[ENA]
¡û
>C141008826
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
318869
318793
-
Arg
TCT
[Ensembl]
¡û
>C151004628
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
318644
318568
-
Arg
TCT
[Ensembl]
¡û
>C151004679
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
318644
318568
-
Arg
TCT
[Ensembl]
¡û
>C10114612
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
314227
314151
-
Arg
TCT
[Ensembl]
¡û
>C11124252
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
278819
278743
-
Arg
TCT
[Ensembl]
¡û
>C121003170
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
314510
314434
-
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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