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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203178 (105 seq.)
>W1710925673
LODL01000012
Betaproteobacteria
Dechloromonas denitrificans [LODL]
3498
3422
-
Ile
GAT
[ENA]
¡û
>W1710925683
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
598303
598227
-
Ile
GAT
[ENA]
¡û
>W1710925707
LODL01000035
Betaproteobacteria
Dechloromonas denitrificans [LODL]
230187
230111
-
Ile
GAT
[ENA]
¡û
>W1711718086
MTHD01000011
Betaproteobacteria
Azonexus hydrophilus [MTHD]
1847
1923
+
Ile
GAT
[ENA]
¡û
>W131223779
AUCH01000043
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
1748
1824
+
Ile
GAT
[ENA]
¡û
>C007457
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
78441
78517
+
Ile
GAT
[Ensembl]
¡û
>C007465
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
716864
716940
+
Ile
GAT
[Ensembl]
¡û
>C007471
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
872209
872285
+
Ile
GAT
[Ensembl]
¡û
>C007478
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1229365
1229441
+
Ile
GAT
[Ensembl]
¡û
>WENV180099624
NMRC01021828
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
3697
3621
-
Ile
GAT
[ENA]
¢þ
>WENV180117839
OARM01000342
[OARM] human gut metagenome; ENVO:feces
2776
2852
+
Ile
GAT
[ENA]
¢þ
>WENV180285175
OBID01261512
[OBID] metagenome; sludge
310
234
-
Ile
GAT
[ENA]
¢þ
>WENV180285191
OBID01270381
[OBID] metagenome; sludge
109
185
+
Ile
GAT
[ENA]
¢þ
>WENV180285861
OBID01771188
[OBID] metagenome; sludge
166
90
-
Ile
GAT
[ENA]
¢þ
>WENV180310729
OBJT01017833
[OBJT] soil metagenome; soil
1014
938
-
Ile
GAT
[ENA]
¢þ
>WENV180728543
ODGU01061066
[ODGU] human metagenome; G_DNA_Supragingival plaque
905
829
-
Ile
GAT
[ENA]
¢þ
>WENV180797544
ODJB01074580
[ODJB] human metagenome; G_DNA_Supragingival plaque
733
657
-
Ile
GAT
[ENA]
¢þ
>WENV180944364
ODUC01015187
[ODUC] human metagenome; G_DNA_Supragingival plaque
106
182
+
Ile
GAT
[ENA]
¢þ
>WENV181009797
ODWE01218912
[ODWE] human metagenome; G_DNA_Supragingival plaque
101
177
+
Ile
GAT
[ENA]
¢þ
>WENV181077355
OEAP01045465
[OEAP] human metagenome; G_DNA_Supragingival plaque
939
863
-
Ile
GAT
[ENA]
¢þ
>WENV181189948
OEOF01348976
[OEOF] activated sludge metagenome; Activated Sludge
191
115
-
Ile
GAT
[ENA]
¢þ
>WENV181311658
OFJB01007190
[OFJB] sludge metagenome; sludge
726
802
+
Ile
GAT
[ENA]
¢þ
>WENV181371962
OFQW01004336
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1217
1141
-
Ile
GAT
[ENA]
¢þ
>WENV181376011
OFQZ01012275
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
660
736
+
Ile
GAT
[ENA]
¢þ
>WENV181380624
OFRE01000832
[OFRE] wastewater metagenome; Exp Tend NO 50WW
4993
4917
-
Ile
GAT
[ENA]
¢þ
>WENV181389731
OFRO01002597
[OFRO] wastewater metagenome; Exp Tend NO 10WW
2510
2586
+
Ile
GAT
[ENA]
¢þ
>WENV181395529
OFSA01001951
[OFSA] freshwater metagenome; Freshwater Lake
865
789
-
Ile
GAT
[ENA]
¢þ
>WENV181415542
OGCL01014097
[OGCL] hot springs metagenome; Hot spring water
2156
2080
-
Ile
GAT
[ENA]
¢þ
>WENV181834833
OGVG01002127
[OGVG] freshwater metagenome; freshwater
921
845
-
Ile
GAT
[ENA]
¢þ
>WENV181835280
OGVH01036809
[OGVH] freshwater metagenome; freshwater
405
329
-
Ile
GAT
[ENA]
¢þ
>WENV181837665
OGVL01000377
[OGVL] freshwater metagenome; freshwater
2151
2227
+
Ile
GAT
[ENA]
¢þ
>WENV181840429
OGVP01000820
[OGVP] freshwater metagenome; freshwater
3637
3561
-
Ile
GAT
[ENA]
¢þ
>WENV181841284
OGVR01004847
[OGVR] freshwater metagenome; freshwater
182
106
-
Ile
GAT
[ENA]
¢þ
>WENV181841288
OGVR01005324
[OGVR] freshwater metagenome; freshwater
651
727
+
Ile
GAT
[ENA]
¢þ
>WENV181843929
OGVV01000738
[OGVV] freshwater metagenome; freshwater
2792
2868
+
Ile
GAT
[ENA]
¢þ
>WENV181846907
OGVY01000731
[OGVY] freshwater metagenome; freshwater
3659
3583
-
Ile
GAT
[ENA]
¢þ
>WENV181850132
OGWC01001491
[OGWC] freshwater metagenome; freshwater
150
226
+
Ile
GAT
[ENA]
¢þ
>WENV181852678
OGWH01000371
[OGWH] freshwater metagenome; freshwater
2619
2695
+
Ile
GAT
[ENA]
¢þ
>WENV181853354
OGWI01002663
[OGWI] freshwater metagenome; freshwater
1974
1898
-
Ile
GAT
[ENA]
¢þ
>W141277644
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
291071
290995
-
Ile
GAT
[ENA]
¡û
>W141277650
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
117146
117070
-
Ile
GAT
[ENA]
¡û
>W141277665
JAET01000002
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
809965
809889
-
Ile
GAT
[ENA]
¡û
>W141401173
JDSS02000024
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
197555
197479
-
Ile
GAT
[ENA]
¡û
>W141426838
JEMY01000048
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
1766
1842
+
Ile
GAT
[ENA]
¡û
>WENV170551818
CXWJ01024412
[CXWJ] wastewater metagenome; activated sludge
986
910
-
Ile
GAT
[ENA]
¢þ
>WENV170573133
FLYJ01000298
[FLYJ] hot springs metagenome; Sediment
2692
2768
+
Ile
GAT
[ENA]
¢þ
>WENV170651795
JRYG01003251
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
81
5
-
Ile
GAT
[ENA]
¢þ
>WENV170657818
JTFP01023039
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
8
84
+
Ile
GAT
[ENA]
¢þ
>WENV170670304
LAHT01001483
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
856
780
-
Ile
GAT
[ENA]
¢þ
>WENV170684588
LFRM01047574
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
545
621
+
Ile
GAT
[ENA]
¢þ
>C191081645
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
569351
569427
+
Ile
GAT
-
¡û
>C191081651
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
757517
757593
+
Ile
GAT
-
¡û
>C191081670
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
2240311
2240235
-
Ile
GAT
-
¡û
>W09100866
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
1152437
1152513
+
Ile
GAT
[ENA]
¡û
>SRA1053602
SRR035098.449992
454 Sequencing (SRP001819)
204
128
-
Ile
GAT
[SRA]
>WENV033868
AACY021561749
Marine microbial communities from Global Ocean Sampling (GOS)
653
731
+
Ile
GAT
[ENA]
>C10101113
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2602029
2602105
+
Ile
GAT
[Ensembl]
¡û
>C10101124
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4569647
4569571
-
Ile
GAT
[Ensembl]
¡û
>W1610506414
FLQX01000078
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
1733
1809
+
Ile
GAT
[ENA]
¡û
>W1610506490
FLQY01000362
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
2060
2136
+
Ile
GAT
[ENA]
¡û
>W1610617613
LGUD01000026
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
3591
3515
-
Ile
GAT
[ENA]
¡û
>W1610783319
LODL01000012
Betaproteobacteria
Dechloromonas denitrificans [LODL]
3498
3422
-
Ile
GAT
[ENA]
¡û
>W1610783329
LODL01000019
Betaproteobacteria
Dechloromonas denitrificans [LODL]
598303
598227
-
Ile
GAT
[ENA]
¡û
>W1610783353
LODL01000035
Betaproteobacteria
Dechloromonas denitrificans [LODL]
230187
230111
-
Ile
GAT
[ENA]
¡û
>WENV079717
AATN01000020
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1579
1657
+
Ile
GAT
[ENA]
>WENV079790
AATN01000869
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
42
120
+
Ile
GAT
[ENA]
>WENV079935
AATN01009739
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
284
360
+
Ile
GAT
[ENA]
>WENV079945
AATO01000001
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1807
1885
+
Ile
GAT
[ENA]
>WENV080188
AATO01011435
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
502
578
+
Ile
GAT
[ENA]
>WENV080198
AATO01011798
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
303
381
+
Ile
GAT
[ENA]
>ENV000023
AB213422
Environmental sample from ENV division of INSDC
92
168
+
Ile
GAT
[ENA]
>ENV000412
AF422535
Environmental sample from ENV division of INSDC
118
194
+
Ile
GAT
[ENA]
>ENV000418
AF422540
Environmental sample from ENV division of INSDC
117
193
+
Ile
GAT
[ENA]
>ENV000422
AF422542
Environmental sample from ENV division of INSDC
117
193
+
Ile
GAT
[ENA]
>ENV000424
AF422543
Environmental sample from ENV division of INSDC
117
193
+
Ile
GAT
[ENA]
>ENV000426
AF422545
Environmental sample from ENV division of INSDC
116
192
+
Ile
GAT
[ENA]
>ENV000435
AF422552
Environmental sample from ENV division of INSDC
117
193
+
Ile
GAT
[ENA]
>ENV000441
AF422556
Environmental sample from ENV division of INSDC
117
193
+
Ile
GAT
[ENA]
>ENV000446
AF422559
Environmental sample from ENV division of INSDC
116
192
+
Ile
GAT
[ENA]
>ENV000466
AF422575
Environmental sample from ENV division of INSDC
117
193
+
Ile
GAT
[ENA]
>ENV001071
AY484720
Environmental sample from ENV division of INSDC
524
600
+
Ile
GAT
[ENA]
>ENV001075
AY484722
Environmental sample from ENV division of INSDC
517
593
+
Ile
GAT
[ENA]
>ENV003021
AY957958
Environmental sample from ENV division of INSDC
604
680
+
Ile
GAT
[ENA]
>ENV003023
AY957959
Environmental sample from ENV division of INSDC
566
642
+
Ile
GAT
[ENA]
>ENV003029
AY957967
Environmental sample from ENV division of INSDC
543
619
+
Ile
GAT
[ENA]
>ENV005217
EF565147
Environmental sample from ENV division of INSDC
1594
1672
+
Ile
GAT
[ENA]
>ENV005219
EF565148
Environmental sample from ENV division of INSDC
1593
1671
+
Ile
GAT
[ENA]
>ENV005221
EF565149
Environmental sample from ENV division of INSDC
1593
1669
+
Ile
GAT
[ENA]
>ENV005223
EF565150
Environmental sample from ENV division of INSDC
1296
1372
+
Ile
GAT
[ENA]
>ENV005225
EF565151
Environmental sample from ENV division of INSDC
1593
1669
+
Ile
GAT
[ENA]
>ENV005227
EF565152
Environmental sample from ENV division of INSDC
1592
1668
+
Ile
GAT
[ENA]
>ENV005229
EF565153
Environmental sample from ENV division of INSDC
1592
1668
+
Ile
GAT
[ENA]
>ENV005231
EF565154
Environmental sample from ENV division of INSDC
1593
1669
+
Ile
GAT
[ENA]
>ENV005233
EF565155
Environmental sample from ENV division of INSDC
1593
1671
+
Ile
GAT
[ENA]
>ENV005235
EF565156
Environmental sample from ENV division of INSDC
1593
1671
+
Ile
GAT
[ENA]
>ENV005237
EF565157
Environmental sample from ENV division of INSDC
1595
1671
+
Ile
GAT
[ENA]
>ENV005239
EF565158
Environmental sample from ENV division of INSDC
1590
1666
+
Ile
GAT
[ENA]
>ENV005241
EF565159
Environmental sample from ENV division of INSDC
1592
1668
+
Ile
GAT
[ENA]
>ENV005243
EF565160
Environmental sample from ENV division of INSDC
1597
1673
+
Ile
GAT
[ENA]
>ENV005245
EF565161
Environmental sample from ENV division of INSDC
1152
1228
+
Ile
GAT
[ENA]
>ENV005247
EF565162
Environmental sample from ENV division of INSDC
1598
1674
+
Ile
GAT
[ENA]
>W1710498917
FLQX01000078
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
1733
1809
+
Ile
GAT
[ENA]
¡û
>W1710498993
FLQY01000362
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
2060
2136
+
Ile
GAT
[ENA]
¡û
>W1710516967
FNCY01000039
Betaproteobacteria
Propionivibrio dicarboxylicus [FNCY]
3589
3513
-
Ile
GAT
[ENA]
¡û
>W1710743163
LGUD01000026
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
3591
3515
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK