This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20348 (95 seq.)
>W1711143184
LVHE01000004
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
125379
125469
+
Ser
GGA
[ENA]
¡û
>W1711577320
MNPS01000002
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
31377
31287
-
Ser
GGA
[ENA]
¡û
>W1711577373
MNPT01000003
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
14984
14894
-
Ser
GGA
[ENA]
¡û
>C171033085
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
1438805
1438895
+
Ser
GGA
-
¡û
>C171109013
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
1604274
1604184
-
Ser
GGA
-
¡û
>W131164872
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
1764290
1764380
+
Ser
GGA
[ENA]
¡û
>W131240790
BAON01000003
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
1900
1810
-
Ser
GGA
[ENA]
¡û
>W131241381
BARL01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
650048
649958
-
Ser
GGA
[ENA]
¡û
>W141195248
AYTY01000078
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
9929
9839
-
Ser
GGA
[ENA]
¡û
>W141224548
BAIN01000003
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
80298
80208
-
Ser
GGA
[ENA]
¡û
>W141224598
BAIO01000060
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
4519
4609
+
Ser
GGA
[ENA]
¡û
>W141226119
BAJU01000017
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
35720
35810
+
Ser
GGA
[ENA]
¡û
>W141227267
BAKW01000013
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
53073
53163
+
Ser
GGA
[ENA]
¡û
>W141229950
BASM01000037
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
8020
7930
-
Ser
GGA
[ENA]
¡û
>W141247989
CBLY010000006
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
337914
338004
+
Ser
GGA
[ENA]
¡û
>WENV170669769
LAHS01002394
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
30258
30168
-
Ser
GGA
[ENA]
¢þ
>C181071363
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
1269324
1269414
+
Ser
GGA
-
¡û
>C181077140
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
614920
615010
+
Ser
GGA
-
¡û
>C191090664
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
2303383
2303293
-
Ser
GGA
-
¡û
>C191158430
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
1936403
1936313
-
Ser
GGA
-
¡û
>W141726120
JNAB01000053
Alphaproteobacteria
Kozakia baliensis [JNAB]
26638
26548
-
Ser
GGA
[ENA]
¡û
>W1910006532
BAGS01000015
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
34586
34496
-
Ser
GGA
[ENA]
¡û
>W1910008083
BDEU01000075
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
10513
10423
-
Ser
GGA
[ENA]
¡û
>W1910008137
BDEV01000081
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
16312
16222
-
Ser
GGA
[ENA]
¡û
>W1910008242
BDEX01000077
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
16142
16052
-
Ser
GGA
[ENA]
¡û
>W1910015275
BDLW01000028
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
44775
44685
-
Ser
GGA
[ENA]
¡û
>W1910181870
BJMK01000008
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
88125
88215
+
Ser
GGA
[ENA]
¡û
>W1910182388
BJMV01000016
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
19682
19592
-
Ser
GGA
[ENA]
¡û
>W1910697256
MEJG01000005
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
123331
123421
+
Ser
GGA
[ENA]
¡û
>W1910871874
NCXK01000029
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
19303
19393
+
Ser
GGA
[ENA]
¡û
>W1910872361
NDFO01000017
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
9231
9141
-
Ser
GGA
[ENA]
¡û
>W1910872406
NDFP01000016
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
9231
9141
-
Ser
GGA
[ENA]
¡û
>W1910972030
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
465831
465741
-
Ser
GGA
[ENA]
¡û
>W1911138386
NOXG01000003
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
54667
54757
+
Ser
GGA
[ENA]
¡û
>W1810000579
BEWK01000044
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
15680
15590
-
Ser
GGA
[ENA]
¡û
>W1810000704
BEWN01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
90868
90958
+
Ser
GGA
[ENA]
¡û
>W1810044996
LMYH01000012
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
32005
31915
-
Ser
GGA
[ENA]
¡û
>W1810045029
LMYI01000005
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
31978
31888
-
Ser
GGA
[ENA]
¡û
>W1810045093
LMYJ01000009
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
31978
31888
-
Ser
GGA
[ENA]
¡û
>W1810053984
PDEU01000003
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
299658
299748
+
Ser
GGA
[ENA]
¡û
>W1510011590
BBMU01000261
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
6883
6973
+
Ser
GGA
[ENA]
¡û
>W1511271185
JOKM01000071
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
78133
78043
-
Ser
GGA
[ENA]
¡û
>W11184386
BABS01000107
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
6530
6620
+
Ser
GGA
[ENA]
¡û
>W11184475
BABW01000693
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
225
135
-
Ser
GGA
[ENA]
¡û
>W11186894
CADS01000016
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
51701
51791
+
Ser
GGA
[ENA]
¡û
>W11186965
CADT01000014
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
25545
25455
-
Ser
GGA
[ENA]
¡û
>C161096030
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
2718838
2718748
-
Ser
GGA
-
¡û
>C161105540
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
1192445
1192355
-
Ser
GGA
[Ensembl]
¡û
>C161105559
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
961382
961472
+
Ser
GGA
[Ensembl]
¡û
>W121016326
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
4407
4317
-
Ser
GGA
[ENA]
¡û
>W121034268
AHKI01000030
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
256281
256191
-
Ser
GGA
[ENA]
¡û
>W121123408
BADZ01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
289434
289524
+
Ser
GGA
[ENA]
¡û
>W1610040655
BALE01000010
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
10800
10710
-
Ser
GGA
[ENA]
¡û
>W1610040727
BAMU01000104
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
13416
13506
+
Ser
GGA
[ENA]
¡û
>W1610040927
BAMZ01000023
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
11731
11641
-
Ser
GGA
[ENA]
¡û
>W1610041188
BANG01000022
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
119673
119763
+
Ser
GGA
[ENA]
¡û
>W1610041219
BANH01000023
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
50534
50624
+
Ser
GGA
[ENA]
¡û
>W1610076836
BCZB01000003
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
133775
133685
-
Ser
GGA
[ENA]
¡û
>C131009962
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
2765080
2765170
+
Ser
GGA
[Ensembl]
¡û
>W1610624320
LHZH01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
21869
21959
+
Ser
GGA
[ENA]
¡û
>W1610624352
LHZI01001476
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2075
1985
-
Ser
GGA
[ENA]
¡û
>W1610624422
LHZJ01000084
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
12669
12579
-
Ser
GGA
[ENA]
¡û
>W1610624534
LHZM01000080
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
96480
96570
+
Ser
GGA
[ENA]
¡û
>W1610624627
LHZO01000058
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
141035
140945
-
Ser
GGA
[ENA]
¡û
>W1610624728
LHZQ01000217
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
78081
77991
-
Ser
GGA
[ENA]
¡û
>W1610624820
LHZS01000101
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
129460
129550
+
Ser
GGA
[ENA]
¡û
>W1610624845
LHZT01000107
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
18139
18049
-
Ser
GGA
[ENA]
¡û
>W1610624888
LHZU01000078
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
6548
6638
+
Ser
GGA
[ENA]
¡û
>W1610625004
LHZW01000055
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
235988
235898
-
Ser
GGA
[ENA]
¡û
>W1610625025
LHZX01000272
Alphaproteobacteria
Acetobacter malorum [LHZX]
18647
18737
+
Ser
GGA
[ENA]
¡û
>W1610954192
LVHE01000004
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
125379
125469
+
Ser
GGA
[ENA]
¡û
>W1710037853
BALE01000010
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
10800
10710
-
Ser
GGA
[ENA]
¡û
>W1710037925
BAMU01000104
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
13416
13506
+
Ser
GGA
[ENA]
¡û
>W1710038125
BAMZ01000023
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
11731
11641
-
Ser
GGA
[ENA]
¡û
>W1710038386
BANG01000022
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
119673
119763
+
Ser
GGA
[ENA]
¡û
>W1710038417
BANH01000023
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
50534
50624
+
Ser
GGA
[ENA]
¡û
>W1710074525
BCZB01000003
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
133775
133685
-
Ser
GGA
[ENA]
¡û
>W1710613504
JATM01000001
Alphaproteobacteria
Bombella intestini [JATM]
306858
306768
-
Ser
GGA
[ENA]
¡û
>W1710624246
JOMM01000009
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
1782
1692
-
Ser
GGA
[ENA]
¡û
>W1710624289
JOMN01000007
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
127593
127683
+
Ser
GGA
[ENA]
¡û
>W1710624511
JOOZ01000051
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
6571
6661
+
Ser
GGA
[ENA]
¡û
>W1710624677
JOPD01000004
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
21277
21367
+
Ser
GGA
[ENA]
¡û
>W1710624842
JOPI01000016
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
1517
1427
-
Ser
GGA
[ENA]
¡û
>W1710624884
JOPJ01000011
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
3233
3143
-
Ser
GGA
[ENA]
¡û
>W1710755438
LHZH01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
21869
21959
+
Ser
GGA
[ENA]
¡û
>W1710755470
LHZI01001476
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2075
1985
-
Ser
GGA
[ENA]
¡û
>W1710755540
LHZJ01000084
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
12669
12579
-
Ser
GGA
[ENA]
¡û
>W1710755652
LHZM01000080
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
96480
96570
+
Ser
GGA
[ENA]
¡û
>W1710755745
LHZO01000058
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
141035
140945
-
Ser
GGA
[ENA]
¡û
>W1710755846
LHZQ01000217
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
78081
77991
-
Ser
GGA
[ENA]
¡û
>W1710755938
LHZS01000101
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
129460
129550
+
Ser
GGA
[ENA]
¡û
>W1710755963
LHZT01000107
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
18139
18049
-
Ser
GGA
[ENA]
¡û
>W1710756006
LHZU01000078
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
6548
6638
+
Ser
GGA
[ENA]
¡û
>W1710756122
LHZW01000055
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
235988
235898
-
Ser
GGA
[ENA]
¡û
>W1710756143
LHZX01000272
Alphaproteobacteria
Acetobacter malorum [LHZX]
18647
18737
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK