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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203539 (23 seq.)
>C010236
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
1304346
1304422
+
Ile
GAT
[Ensembl]
¡û
>C010251
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
3816886
3816810
-
Ile
GAT
[Ensembl]
¡û
>C017466
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1354380
1354456
+
Ile
GAT
[Ensembl]
¡û
>C017471
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1805203
1805279
+
Ile
GAT
[Ensembl]
¡û
>C017487
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
3334566
3334490
-
Ile
GAT
[Ensembl]
¡û
>C017491
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
2886291
2886215
-
Ile
GAT
[Ensembl]
¡û
>w018117
AASH01000049
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
2407
2483
+
Ile
GAT
[ENA]
¡û
>WENV180354456
OBLQ011770195
[OBLQ] soil metagenome; soil
29
105
+
Ile
GAT
[ENA]
¢þ
>WENV180584060
OCNO01012186
[OCNO] soil metagenome; Clay
122
198
+
Ile
GAT
[ENA]
¢þ
>WENV181231811
OFEK01069582
[OFEK] activated sludge metagenome; Anaerobic digester
453
377
-
Ile
GAT
[ENA]
¢þ
>WENV181285673
OFGT01000247
[OFGT] soil metagenome; Clay
1727
1651
-
Ile
GAT
[ENA]
¢þ
>WENV183701952
PDVH01005541
[PDVH] alkali sediment metagenome; glacial lake sediment
412
336
-
Ile
GAT
[ENA]
¢þ
>WENV170006674
AMWB02043249
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1437
1361
-
Ile
GAT
[ENA]
¢þ
>WENV170660591
JXWU01000725
[JXWU] soil metagenome; rice field; organic control Plot
156
232
+
Ile
GAT
[ENA]
¢þ
>W09103551
AAJH01000022
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
9248
9172
-
Ile
GAT
[ENA]
¡û
>W09103557
AAJH01000045
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
940
1016
+
Ile
GAT
[ENA]
¡û
>W09105072
AAON01000021
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
1874
1950
+
Ile
GAT
[ENA]
¡û
>C09106348
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
2113516
2113592
+
Ile
GAT
[Ensembl]
¡û
>C09106366
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3988977
3988901
-
Ile
GAT
[Ensembl]
¡û
>W1810486186
QAXR01000052
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
1825
1901
+
Ile
GAT
[ENA]
¡û
>W1610046460
BBCJ01000057
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
3433
3357
-
Ile
GAT
[ENA]
¡û
>ENV000301
AF164147
Environmental sample from ENV division of INSDC
313
389
+
Ile
GAT
[ENA]
>W1710043256
BBCJ01000057
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
3433
3357
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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