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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20364 (42 seq.)
>W1711148794
LVKU01000032
Betaproteobacteria
Ralstonia solanacearum [LVKU]
237300
237210
-
Leu
TAA
[ENA]
¡û
>W1711190219
LWRX01000250
Betaproteobacteria
Ralstonia sp. RL [LWRX]
140
230
+
Leu
TAA
[ENA]
¡û
>W131111880
APMQ01000026
Betaproteobacteria
Ralstonia pickettii OR214 [APMQ]
21056
20966
-
Leu
TAA
[ENA]
¡û
>W141075114
ASZV01000012
Betaproteobacteria
Ralstonia sp. AU12-08 [ASZV]
1213
1123
-
Leu
TAA
[ENA]
¡û
>WENV181221627
OFCW01000121
[OFCW] microbial mat metagenome; Microbial Mat
18050
17960
-
Leu
TAA
[ENA]
¢þ
>WENV170573107
FLYJ01000039
[FLYJ] hot springs metagenome; Sediment
140
230
+
Leu
TAA
[ENA]
¢þ
>WENV170596011
FUFK012071303
[FUFK] metagenome; unknown
329
239
-
Leu
TAA
[ENA]
¢þ
>C181084127
CP023537
Betaproteobacteria
Ralstonia pickettii FDAARGOS_410 [CP023537, CP023538]
2225418
2225508
+
Leu
TAA
-
¡û
>C191021332
CP022757
Betaproteobacteria
Ralstonia solanacearum T101 [CP022757]
2360865
2360955
+
Leu
TAA
-
¡û
>C191021385
CP022759
Betaproteobacteria
Ralstonia solanacearum T98 [CP022759]
2355573
2355663
+
Leu
TAA
-
¡û
>C191021437
CP022761
Betaproteobacteria
Ralstonia solanacearum T95 [CP022761]
2452224
2452314
+
Leu
TAA
-
¡û
>C191021490
CP022763
Betaproteobacteria
Ralstonia solanacearum T82 [CP022763]
2360899
2360989
+
Leu
TAA
-
¡û
>C191021649
CP022770
Betaproteobacteria
Ralstonia solanacearum T51 [CP022770]
2398227
2398317
+
Leu
TAA
-
¡û
>C191021755
CP022774
Betaproteobacteria
Ralstonia solanacearum T12 [CP022774]
2360751
2360841
+
Leu
TAA
-
¡û
>C191021808
CP022776
Betaproteobacteria
Ralstonia solanacearum T11 [CP022776]
2398655
2398745
+
Leu
TAA
-
¡û
>C191022126
CP022788
Betaproteobacteria
Ralstonia solanacearum SL3175 [CP022788]
2355588
2355678
+
Leu
TAA
-
¡û
>C191022388
CP022798
Betaproteobacteria
Ralstonia solanacearum SL2064 [CP022798]
2451337
2451427
+
Leu
TAA
-
¡û
>C191023476
CP023016
Betaproteobacteria
Ralstonia solanacearum SL3022 [CP023016]
2454177
2454267
+
Leu
TAA
-
¡û
>W141564971
JIBE01000003
Betaproteobacteria
Ralstonia sp. UNC404CL21Col [JIBE]
361531
361621
+
Leu
TAA
[ENA]
¡û
>W1910128474
BHVX01000002
Betaproteobacteria
Ralstonia sp. SET104 [BHVX]
73460
73370
-
Leu
TAA
[ENA]
¡û
>W1810161564
PJEY01000001
Betaproteobacteria
Ralstonia mannitolilytica GML-Rals1-TR [PJEY]
355657
355567
-
Leu
TAA
[ENA]
¡û
>W1810194518
PKPB01000003
Betaproteobacteria
Ralstonia insidiosa WCHRI065437 [PKPB]
438288
438378
+
Leu
TAA
[ENA]
¡û
>W1810194580
PKPC01000020
Betaproteobacteria
Ralstonia insidiosa WCHRI065162 [PKPC]
84672
84762
+
Leu
TAA
[ENA]
¡û
>W1810194599
PKPD01000001
Betaproteobacteria
Ralstonia mannitolilytica WCHRM065694 [PKPD]
708381
708291
-
Leu
TAA
[ENA]
¡û
>W1810707152
QMKS01000009
Betaproteobacteria
Ralstonia sp. GX3-BWBA [QMKS]
371933
372023
+
Leu
TAA
[ENA]
¡û
>C151072442
CP010799
Betaproteobacteria
Ralstonia mannitolilytica SN82F48 [CP010799, CP010800]
2029875
2029785
-
Leu
TAA
[Ensembl]
¡û
>W1510018919
BBUP01000025
Betaproteobacteria
Ralstonia mannitolilytica MRY14-0246 [BBUP]
65384
65474
+
Leu
TAA
[ENA]
¡û
>W1511392328
JSZO01000001
Betaproteobacteria
Ralstonia sp. A12 [JSZO]
717090
717180
+
Leu
TAA
[ENA]
¡û
>W1511449659
JVBI01000073
Betaproteobacteria
Ralstonia solanacearum 58_RSOL [JVBI]
34373
34463
+
Leu
TAA
[ENA]
¡û
>W1511534558
JYOB01000010
Betaproteobacteria
Burkholderiaceae bacterium 26 [JYOB]
394019
394109
+
Leu
TAA
[ENA]
¡û
>W1511693164
LFZM01000017
Betaproteobacteria
Ralstonia sp. MD27 [LFZM]
4844
4754
-
Leu
TAA
[ENA]
¡û
>C121016490
FP885906
Betaproteobacteria
Ralstonia solanacearum PSI07 [FP885906]
2377956
2378046
+
Leu
TAA
[Ensembl]
¡û
>C161033014
CP011257
Betaproteobacteria
Ralstonia mannitolilytica SN83A39 [CP011257, CP011258]
3005818
3005728
-
Leu
TAA
[Ensembl]
¡û
>C161043106
CP012605
Betaproteobacteria
Ralstonia insidiosa FC1138 [CP012605, CP012606]
2297775
2297865
+
Leu
TAA
-
¡û
>C161047920
CP012943
Betaproteobacteria
Ralstonia solanacearum IBSBF1503 [CP012943]
3212140
3212050
-
Leu
TAA
-
¡û
>C161076354
CP014702
Betaproteobacteria
Ralstonia solanacearum KACC 10722 [CP014702]
2444185
2444275
+
Leu
TAA
[Ensembl]
¡û
>C161093275
CP016022
Betaproteobacteria
Ralstonia insidiosa ATCC 49129 [CP016022, CP016023]
2187944
2188034
+
Leu
TAA
[Ensembl]
¡û
>W1610053775
BBQS01000149
Betaproteobacteria
Ralstonia sp. NT80 [BBQS]
20817
20727
-
Leu
TAA
[ENA]
¡û
>W1610959525
LVKU01000032
Betaproteobacteria
Ralstonia solanacearum [LVKU]
237300
237210
-
Leu
TAA
[ENA]
¡û
>W1610992338
LWRX01000250
Betaproteobacteria
Ralstonia sp. RL [LWRX]
140
230
+
Leu
TAA
[ENA]
¡û
>W1710050153
BBQS01000149
Betaproteobacteria
Ralstonia sp. NT80 [BBQS]
20817
20727
-
Leu
TAA
[ENA]
¡û
>W1710572656
FOWV01000003
Betaproteobacteria
Ralstonia sp. NFACC01 [FOWV]
236608
236698
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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