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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203929 (80 seq.)
>W1711167343
LVWH01000026
Bacillota
Paenibacillus sp. P3E [LVWH]
56781
56858
+
Arg
TCT
[ENA]
¡û
>W1711167433
LVWI01000030
Bacillota
Paenibacillus helianthi P26E [LVWI]
80838
80915
+
Arg
TCT
[ENA]
¡û
>W1711169217
LVYY01000005
Bacillota
Paenibacillus sp. P32E [LVYY]
147784
147861
+
Arg
TCT
[ENA]
¡û
>W1711169359
LVYZ01000035
Bacillota
Paenibacillus sp. P46E [LVYZ]
62900
62823
-
Arg
TCT
[ENA]
¡û
>W1711499572
MKQK01000089
Bacillota
Paenibacillus odorifer [MKQK]
347
270
-
Arg
TCT
[ENA]
¡û
>W1711499623
MKQL01000038
Bacillota
Paenibacillus odorifer [MKQL]
15157
15234
+
Arg
TCT
[ENA]
¡û
>W1711499715
MKQM01000101
Bacillota
Paenibacillus odorifer [MKQM]
386
309
-
Arg
TCT
[ENA]
¡û
>W1711499743
MKQN01000022
Bacillota
Paenibacillus odorifer [MKQN]
404
327
-
Arg
TCT
[ENA]
¡û
>W1711499849
MKQO01000103
Bacillota
Paenibacillus odorifer [MKQO]
15282
15359
+
Arg
TCT
[ENA]
¡û
>W1711499898
MKQP01000066
Bacillota
Paenibacillus odorifer [MKQP]
15530
15607
+
Arg
TCT
[ENA]
¡û
>W1711632838
MPTC01000020
Bacillota
Paenibacillus odorifer [MPTC]
82709
82786
+
Arg
TCT
[ENA]
¡û
>W1711632840
MPTC01000025
Bacillota
Paenibacillus odorifer [MPTC]
16139
16062
-
Arg
TCT
[ENA]
¡û
>W1711632917
MPTD01000017
Bacillota
Paenibacillus odorifer [MPTD]
164996
165071
+
Arg
TCT
[ENA]
¡û
>W1711632918
MPTD01000021
Bacillota
Paenibacillus odorifer [MPTD]
24194
24117
-
Arg
TCT
[ENA]
¡û
>W1711632988
MPTE01000050
Bacillota
Paenibacillus odorifer [MPTE]
666
589
-
Arg
TCT
[ENA]
¡û
>W1711633051
MPTF01000022
Bacillota
Paenibacillus odorifer [MPTF]
97834
97911
+
Arg
TCT
[ENA]
¡û
>W1711633105
MPTG01000027
Bacillota
Paenibacillus odorifer [MPTG]
464
387
-
Arg
TCT
[ENA]
¡û
>W1711633160
MPTH01000021
Bacillota
Paenibacillus odorifer [MPTH]
86485
86562
+
Arg
TCT
[ENA]
¡û
>W1711633240
MPTI01000049
Bacillota
Paenibacillus odorifer [MPTI]
309
232
-
Arg
TCT
[ENA]
¡û
>W1711633314
MPTJ01000044
Bacillota
Paenibacillus odorifer [MPTJ]
17729
17652
-
Arg
TCT
[ENA]
¡û
>W1711633372
MPTK01000052
Bacillota
Paenibacillus odorifer [MPTK]
572
495
-
Arg
TCT
[ENA]
¡û
>W1711633406
MPTL01000026
Bacillota
Paenibacillus odorifer [MPTL]
588
511
-
Arg
TCT
[ENA]
¡û
>W1711633470
MPTM01000016
Bacillota
Paenibacillus odorifer [MPTM]
121833
121756
-
Arg
TCT
[ENA]
¡û
>W1711633552
MPTN01000039
Bacillota
Paenibacillus odorifer [MPTN]
37340
37263
-
Arg
TCT
[ENA]
¡û
>W1711633615
MPTO01000030
Bacillota
Paenibacillus odorifer [MPTO]
97974
98051
+
Arg
TCT
[ENA]
¡û
>W1711633652
MPTP01000002
Bacillota
Paenibacillus odorifer [MPTP]
399062
399139
+
Arg
TCT
[ENA]
¡û
>W1711633755
MPTQ01000057
Bacillota
Paenibacillus odorifer [MPTQ]
495
418
-
Arg
TCT
[ENA]
¡û
>W1711633820
MPTR01000047
Bacillota
Paenibacillus odorifer [MPTR]
17200
17123
-
Arg
TCT
[ENA]
¡û
>W1711633927
MPTT01000020
Bacillota
Paenibacillus odorifer [MPTT]
569
492
-
Arg
TCT
[ENA]
¡û
>W1711634021
MPTU01000065
Bacillota
Paenibacillus odorifer [MPTU]
14740
14817
+
Arg
TCT
[ENA]
¡û
>W1711634090
MPTV01000064
Bacillota
Paenibacillus odorifer [MPTV]
15429
15506
+
Arg
TCT
[ENA]
¡û
>W1711636465
MPVM01000013
Bacillota
Paenibacillus odorifer [MPVM]
58502
58425
-
Arg
TCT
[ENA]
¡û
>W1711636626
MPVO01000004
Bacillota
Paenibacillus odorifer [MPVO]
117029
116952
-
Arg
TCT
[ENA]
¡û
>W1711636706
MPVP01000444
Bacillota
Paenibacillus odorifer [MPVP]
1169
1092
-
Arg
TCT
[ENA]
¡û
>C171123244
CP021780
Bacillota
Paenibacillus donghaensis KCTC 13049 [CP021780]
5583131
5583054
-
Arg
TCT
-
¡û
>WENV180186697
OAWV01000525
[OAWV] human gut metagenome; faeces
22381
22457
+
Arg
TCT
[ENA]
¢þ
>W141022559
AJTY01001022
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
8130
8053
-
Arg
TCT
[ENA]
¡û
>WENV180451426
OBXI01010026
[OBXI] human gut metagenome; faeces
1157
1081
-
Arg
TCT
[ENA]
¢þ
>WENV180737943
ODHC01030912
[ODHC] human metagenome; G_DNA_Stool
673
597
-
Arg
TCT
[ENA]
¢þ
>W141072583
ASPV01000107
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
14736
14813
+
Arg
TCT
[ENA]
¡û
>W141073608
ASSG01000368
Bacillota
Paenibacillus graminis RSA19 [ASSG]
7407
7484
+
Arg
TCT
[ENA]
¡û
>WENV181509846
OGGQ01013579
[OGGQ] metagenome; Human gut stool
1835
1911
+
Arg
TCT
[ENA]
¢þ
>WENV181795268
OGRS01056820
[OGRS] human gut metagenome; faeces
73
-1
-
Arg
TCT
[ENA]
¢þ
>WENV181884169
OGXI01051232
[OGXI] human gut metagenome; faeces
773
697
-
Arg
TCT
[ENA]
¢þ
>WENV181887732
OGXL01018954
[OGXL] human gut metagenome; faeces
1074
1150
+
Arg
TCT
[ENA]
¢þ
>WENV181890473
OGXN01037639
[OGXN] human gut metagenome; faeces
428
504
+
Arg
TCT
[ENA]
¢þ
>WENV181891079
OGXO01004891
[OGXO] human gut metagenome; faeces
2679
2603
-
Arg
TCT
[ENA]
¢þ
>WENV181899058
OGXT01056236
[OGXT] human gut metagenome; faeces
421
345
-
Arg
TCT
[ENA]
¢þ
>WENV181917551
OGYG01038857
[OGYG] human gut metagenome; faeces
85
9
-
Arg
TCT
[ENA]
¢þ
>WENV181953956
OGZI01072046
[OGZI] human gut metagenome; faeces
70
146
+
Arg
TCT
[ENA]
¢þ
>W141245627
CALK01000008
Bacillota
Holdemania massiliensis AP2 [CALK]
27629
27553
-
Arg
TCT
[ENA]
¡û
>WENV182606206
OJJT01001704
[OJJT] metagenome; faeces
5133
5209
+
Arg
TCT
[ENA]
¢þ
>WENV182876162
OKRX01019678
[OKRX] human gut metagenome; faeces
1851
1775
-
Arg
TCT
[ENA]
¢þ
>WENV183031522
OLFX01005199
[OLFX] human gut metagenome; faeces
3748
3672
-
Arg
TCT
[ENA]
¢þ
>WENV183095979
OLND01010325
[OLND] human gut metagenome; faeces
620
544
-
Arg
TCT
[ENA]
¢þ
>WENV183135065
OLOD01016901
[OLOD] human gut metagenome; faeces
536
460
-
Arg
TCT
[ENA]
¢þ
>WENV183256192
OLRK01009098
[OLRK] human gut metagenome; faeces
1104
1028
-
Arg
TCT
[ENA]
¢þ
>WENV170068971
CDZP01026677
[CDZP] gut metagenome; human stools
347
271
-
Arg
TCT
[ENA]
¢þ
>C181054866
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
5512309
5512233
-
Arg
TCT
-
¡û
>W09117556
ACCF01000112
Bacillota
Holdemania filiformis DSM 12042 [ACCF]
1182
1258
+
Arg
TCT
[ENA]
¡û
>W1810806456
QRUP01000013
Bacillota
Holdemania filiformis AF24-29 [QRUP]
11518
11594
+
Arg
TCT
[ENA]
¡û
>C151047461
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
5426498
5426575
+
Arg
TCT
[Ensembl]
¡û
>C151047494
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
5466900
5466823
-
Arg
TCT
[Ensembl]
¡û
>C151047634
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
5387133
5387210
+
Arg
TCT
[Ensembl]
¡û
>C151047667
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
5427132
5427055
-
Arg
TCT
[Ensembl]
¡û
>C151048181
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
5787588
5787511
-
Arg
TCT
[Ensembl]
¡û
>C151050877
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
5539233
5539156
-
Arg
TCT
[Ensembl]
¡û
>C151104436
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
6403623
6403546
-
Arg
TCT
[Ensembl]
¡û
>ENV09002935
ADGC01050027
Wallaby gut metagenome MeugComb_C1
311
387
+
Arg
TCT
[ENA]
¡û
>W1511320838
JQCR01000003
Bacillota
Paenibacillus wynnii DSM 18334 [JQCR]
2520918
2520843
-
Arg
TCT
[ENA]
¡û
>W11177625
AGBD01000114
Bacillota
Paenibacillus riograndensis SBR5 [AGBD]
3927
4004
+
Arg
TCT
[ENA]
¡û
>W1610632604
LIPY01000111
Bacillota
Paenibacillus jilunlii [LIPY]
46050
45973
-
Arg
TCT
[ENA]
¡û
>W1610633910
LIRA01001330
Bacillota
Paenibacillus riograndensis [LIRA]
17224
17301
+
Arg
TCT
[ENA]
¡û
>W1610633981
LIRB01000136
Bacillota
Paenibacillus riograndensis [LIRB]
107205
107282
+
Arg
TCT
[ENA]
¡û
>W1710521576
FNGM01000011
Bacillota
Paenibacillus jilunlii [FNGM]
143624
143547
-
Arg
TCT
[ENA]
¡û
>W1710705030
LCZJ02000012
Bacillota
Paenibacillus etheri [LCZJ]
232778
232855
+
Arg
TCT
[ENA]
¡û
>W1710705031
LCZJ02000012
Bacillota
Paenibacillus etheri [LCZJ]
274035
273958
-
Arg
TCT
[ENA]
¡û
>W1710766990
LIPY01000111
Bacillota
Paenibacillus jilunlii [LIPY]
46050
45973
-
Arg
TCT
[ENA]
¡û
>W1710768342
LIRA01001330
Bacillota
Paenibacillus riograndensis [LIRA]
17224
17301
+
Arg
TCT
[ENA]
¡û
>W1710768413
LIRB01000136
Bacillota
Paenibacillus riograndensis [LIRB]
107205
107282
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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