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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20428 (84 seq.)
>W1711120638
LUGK01000123
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
3491
3580
+
Ser
GCT
[ENA]
¡û
>W1711167824
LVWX01000038
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
3407
3496
+
Ser
GCT
[ENA]
¡û
>W1711167889
LVWY01000029
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
3407
3496
+
Ser
GCT
[ENA]
¡û
>W1711185043
LWNA01000123
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
15553
15464
-
Ser
GCT
[ENA]
¡û
>W131204333
ATBQ01000204
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
42073
41984
-
Ser
GCT
[ENA]
¡û
>W1711665926
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
2167695
2167606
-
Ser
GCT
[ENA]
¡û
>W1711678828
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1275563
1275474
-
Ser
GCT
[ENA]
¡û
>C171048697
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
1267090
1267179
+
Ser
GCT
-
¡û
>C171074207
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1923889
1923978
+
Ser
GCT
-
¡û
>C171075486
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
72773
72862
+
Ser
GCT
-
¡û
>C171075613
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
1553964
1553875
-
Ser
GCT
-
¡û
>C171075706
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
1638368
1638279
-
Ser
GCT
-
¡û
>C171075792
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1858290
1858201
-
Ser
GCT
-
¡û
>C171075856
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
32839
32750
-
Ser
GCT
-
¡û
>C171081368
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
1601214
1601125
-
Ser
GCT
-
¡û
>C171089453
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
1539837
1539748
-
Ser
GCT
-
¡û
>C171116254
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
683034
682945
-
Ser
GCT
-
¡û
>C011410
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
1536560
1536473
-
Ser
GCT
[Ensembl]
¡û
>C011564
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
1555029
1554942
-
Ser
GCT
[Ensembl]
¡û
>W141037919
ALPY01000067
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
2182
2271
+
Ser
GCT
[ENA]
¡û
>WENV181659920
OGOF01001392
[OGOF] human gut metagenome; faeces
6986
6897
-
Ser
GCT
[ENA]
¢þ
>WENV181723146
OGPW01001897
[OGPW] human gut metagenome; faeces
4902
4813
-
Ser
GCT
[ENA]
¢þ
>WENV181733991
OGQE01048786
[OGQE] human gut metagenome; faeces
341
252
-
Ser
GCT
[ENA]
¢þ
>W141228046
BALP01000089
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
2284
2373
+
Ser
GCT
[ENA]
¡û
>WENV182370210
OICS01013626
[OICS] human gut metagenome; feces
405
316
-
Ser
GCT
[ENA]
¢þ
>W141246094
CALZ01000154
Bacillota
Lactobacillus equicursoris 66c [CALZ]
12452
12362
-
Ser
GCT
[ENA]
¡û
>W141264111
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
1732989
1732900
-
Ser
GCT
[ENA]
¡û
>W141264955
CCET01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
66893
66804
-
Ser
GCT
[ENA]
¡û
>W141265039
CCEU01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
3417
3506
+
Ser
GCT
[ENA]
¡û
>WENV183124839
OLNW01055886
[OLNW] human gut metagenome; faeces
472
383
-
Ser
GCT
[ENA]
¢þ
>WENV183166881
OLOY01002329
[OLOY] human gut metagenome; faeces
4640
4551
-
Ser
GCT
[ENA]
¢þ
>WENV183772402
PPYF01016839
[PPYF] human gut metagenome; stool from patient with Crohn's disease
36917
36828
-
Ser
GCT
[ENA]
¢þ
>C181024999
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
1534575
1534486
-
Ser
GCT
-
¡û
>C181074512
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
426048
426137
+
Ser
GCT
-
¡û
>C181076076
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
1790044
1789955
-
Ser
GCT
-
¡û
>C181221107
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
1541101
1541012
-
Ser
GCT
-
¡û
>C191063443
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
1871477
1871388
-
Ser
GCT
-
¡û
>W09101743
AAGQ01000009
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
4368
4457
+
Ser
GCT
[ENA]
¡û
>C191089996
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
1287425
1287514
+
Ser
GCT
-
¡û
>C191089997
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
1291794
1291883
+
Ser
GCT
-
¡û
>C191224720
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
1659942
1659853
-
Ser
GCT
-
¡û
>W1910180851
BJLK01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
2071
2160
+
Ser
GCT
[ENA]
¡û
>W1910180906
BJLM01000031
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
2157
2246
+
Ser
GCT
[ENA]
¡û
>W1910180990
BJLO01000046
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
2201
2290
+
Ser
GCT
[ENA]
¡û
>W1910182539
BJMY01000087
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
180
269
+
Ser
GCT
[ENA]
¡û
>W1910186286
CCDS01000009
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
4819
4908
+
Ser
GCT
[ENA]
¡û
>W1910186379
CCDT01000007
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
69841
69752
-
Ser
GCT
[ENA]
¡û
>W1910186433
CCDU01000010
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
2205
2294
+
Ser
GCT
[ENA]
¡û
>W1911631628
PUFG01000057
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
2403
2492
+
Ser
GCT
[ENA]
¡û
>W1911702068
QNXB01000012
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
3465
3554
+
Ser
GCT
[ENA]
¡û
>W1810000514
BEWJ01000030
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
16905
16816
-
Ser
GCT
[ENA]
¡û
>W1810190883
PKKE01000013
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
49012
48923
-
Ser
GCT
[ENA]
¡û
>W10124005
AEAT01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
2033
2122
+
Ser
GCT
[ENA]
¡û
>C11112484
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
1589290
1589201
-
Ser
GCT
[Ensembl]
¡û
>C11112581
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
1734586
1734497
-
Ser
GCT
[Ensembl]
¡û
>W11130842
AEAT01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
2033
2122
+
Ser
GCT
[ENA]
¡û
>W1511510300
JXRV01000063
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
802
713
-
Ser
GCT
[ENA]
¡û
>W11152207
AEXU01000056
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
15034
14945
-
Ser
GCT
[ENA]
¡û
>W1511694267
LGAS01000047
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
17228
17139
-
Ser
GCT
[ENA]
¡û
>W1511698317
LGHR01000021
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
27954
27865
-
Ser
GCT
[ENA]
¡û
>C161057610
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
1567436
1567347
-
Ser
GCT
[Ensembl]
¡û
>W121009825
AGFO01000069
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
529
440
-
Ser
GCT
[ENA]
¡û
>W121010061
AGHW01000057
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
527
438
-
Ser
GCT
[ENA]
¡û
>W1610033128
AZCR01000097
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
2489
2578
+
Ser
GCT
[ENA]
¡û
>W1610033722
AZDE01000037
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
14318
14229
-
Ser
GCT
[ENA]
¡û
>W1610034521
AZDU01000063
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
3838
3748
-
Ser
GCT
[ENA]
¡û
>W1610036641
AZFL01000018
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
15509
15420
-
Ser
GCT
[ENA]
¡û
>W1610044451
BBAN01000071
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
506
595
+
Ser
GCT
[ENA]
¡û
>W1610045840
BBBW01000056
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
6740
6650
-
Ser
GCT
[ENA]
¡û
>W1610120888
CZPS01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
37575
37486
-
Ser
GCT
[ENA]
¡û
>W1610502800
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
795195
795105
-
Ser
GCT
[ENA]
¡û
>W1610527971
JQAV01000018
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
1424
1513
+
Ser
GCT
[ENA]
¡û
>W1610529667
JQCG01000028
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
2193
2282
+
Ser
GCT
[ENA]
¡û
>W1610931835
LUGK01000123
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
3491
3580
+
Ser
GCT
[ENA]
¡û
>W1610977893
LVWX01000038
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
3407
3496
+
Ser
GCT
[ENA]
¡û
>W1610977958
LVWY01000029
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
3407
3496
+
Ser
GCT
[ENA]
¡û
>W1710030400
AZCR01000097
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
2489
2578
+
Ser
GCT
[ENA]
¡û
>W1710030900
AZDE01000037
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
14318
14229
-
Ser
GCT
[ENA]
¡û
>W1710031648
AZDU01000063
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
3838
3748
-
Ser
GCT
[ENA]
¡û
>W1710033680
AZFL01000018
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
15509
15420
-
Ser
GCT
[ENA]
¡û
>W1710042681
BBBW01000056
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
6740
6650
-
Ser
GCT
[ENA]
¡û
>W1710123592
CZPS01000013
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
37575
37486
-
Ser
GCT
[ENA]
¡û
>W1710496199
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
795195
795105
-
Ser
GCT
[ENA]
¡û
>W1710631257
JQCG01000028
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
2193
2282
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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