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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20501 (108 seq.)
>W1710909233
LNQI01000014
Bacillota
[Bacillus] enclensis [LNQI]
73298
73388
+
Ser
GCT
[ENA]
¡û
>W1711019080
LQXM01000003
Bacillota
Rossellomorea aquimaris TF-12 [LQXM]
15837
15927
+
Ser
GCT
[ENA]
¡û
>W1711019105
LQXM01000004
Bacillota
Rossellomorea aquimaris TF-12 [LQXM]
10872
10782
-
Ser
GCT
[ENA]
¡û
>W1711069003
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
751
840
+
Ser
GCT
[ENA]
¡û
>W131196444
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
673
762
+
Ser
GCT
[ENA]
¡û
>W131226341
AUEH01000057
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AUEH]
14280
14191
-
Ser
GCT
[ENA]
¡û
>W1711434721
MINN01000044
Bacillota
Rossellomorea aquimaris [MINN]
1526
1436
-
Ser
GCT
[ENA]
¡û
>W1711484748
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
672
761
+
Ser
GCT
[ENA]
¡û
>W1711484801
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
18258
18169
-
Ser
GCT
[ENA]
¡û
>W1711484835
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
1390
1479
+
Ser
GCT
[ENA]
¡û
>W1711485052
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
197
286
+
Ser
GCT
[ENA]
¡û
>W1711487517
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
705
794
+
Ser
GCT
[ENA]
¡û
>C171057558
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1552948
1552859
-
Ser
GCT
-
¡û
>C171096369
CP019609
Bacillota
Vagococcus penaei CD276 [CP019609]
1294888
1294799
-
Ser
GCT
-
¡û
>C171096377
CP019609
Bacillota
Vagococcus penaei CD276 [CP019609]
1294161
1294072
-
Ser
GCT
-
¡û
>C012617
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
451830
451917
+
Ser
GCT
[Ensembl]
¡û
>w027492
ABCF01000010
Bacillota
Bacillus sp. SG-1 [ABCF]
1124
1216
+
Ser
GCT
[ENA]
¡û
>WENV180608647
OCPU01157084
[OCPU] human gut metagenome; human gut
3
93
+
Ser
GCT
[ENA]
¢þ
>W141092460
AVAA01000303
Bacillota
Schleiferilactobacillus shenzhenensis LY-73 [AVAA]
344
255
-
Ser
GCT
[ENA]
¡û
>W141228366
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
26918
26829
-
Ser
GCT
[ENA]
¡û
>W141263815
CCDN010000004
Bacillota
Rossellomorea vietnamensis [CCDN]
312
222
-
Ser
GCT
[ENA]
¡û
>W141266352
CCMN01000010
Bacillota
Rossellomorea aquimaris [CCMN]
74912
75002
+
Ser
GCT
[ENA]
¡û
>C181003647
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
26928
26839
-
Ser
GCT
-
¡û
>C181003700
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1454111
1454022
-
Ser
GCT
-
¡û
>C181044608
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
451514
451603
+
Ser
GCT
-
¡û
>C181066093
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1625650
1625561
-
Ser
GCT
-
¡û
>C181066160
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1621253
1621164
-
Ser
GCT
-
¡û
>C181071471
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
4593
4682
+
Ser
GCT
-
¡û
>C181113650
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1326532
1326621
+
Ser
GCT
-
¡û
>C181114108
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
640145
640056
-
Ser
GCT
-
¡û
>C181123530
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
491874
491963
+
Ser
GCT
-
¡û
>C181186090
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1505751
1505662
-
Ser
GCT
-
¡û
>C181194834
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1640016
1639927
-
Ser
GCT
-
¡û
>C181227418
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
472640
472729
+
Ser
GCT
-
¡û
>C181227474
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
490504
490593
+
Ser
GCT
-
¡û
>C181227537
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
483987
484076
+
Ser
GCT
-
¡û
>C181227598
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
494041
494130
+
Ser
GCT
-
¡û
>C181227659
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473003
473092
+
Ser
GCT
-
¡û
>C191004206
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1545677
1545588
-
Ser
GCT
-
¡û
>C191035490
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
428350
428439
+
Ser
GCT
-
¡û
>C191040475
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
4450
4539
+
Ser
GCT
-
¡û
>C191092626
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
835078
835167
+
Ser
GCT
-
¡û
>C191092689
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
520759
520848
+
Ser
GCT
-
¡û
>C191092809
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
370903
370992
+
Ser
GCT
-
¡û
>C191093020
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1325963
1325874
-
Ser
GCT
-
¡û
>C191134882
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1618860
1618771
-
Ser
GCT
-
¡û
>W1910605497
LEOX01000037
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
2893
2804
-
Ser
GCT
[ENA]
¡û
>W1910605594
LEOZ01000038
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
2815
2726
-
Ser
GCT
[ENA]
¡û
>W1910605643
LEPA01000037
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
3884
3795
-
Ser
GCT
[ENA]
¡û
>W1910751974
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
374
463
+
Ser
GCT
[ENA]
¡û
>W1910752006
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26962
26873
-
Ser
GCT
[ENA]
¡û
>W1910753024
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
671
760
+
Ser
GCT
[ENA]
¡û
>W1910899444
NGJS01000007
Bacillota
Vagococcus vulneris SS1995 [NGJS]
117193
117104
-
Ser
GCT
[ENA]
¡û
>W1910899451
NGJS01000007
Bacillota
Vagococcus vulneris SS1995 [NGJS]
116569
116480
-
Ser
GCT
[ENA]
¡û
>W1910899621
NGJV01000022
Bacillota
Vagococcus penaei LMG 24833 [NGJV]
1591
1680
+
Ser
GCT
[ENA]
¡û
>W1910899629
NGJV01000022
Bacillota
Vagococcus penaei LMG 24833 [NGJV]
2318
2407
+
Ser
GCT
[ENA]
¡û
>W1910899977
NGKC01000009
Bacillota
Vagococcus acidifermentans LMG 24798 [NGKC]
135253
135166
-
Ser
GCT
[ENA]
¡û
>W1910899984
NGKC01000009
Bacillota
Vagococcus acidifermentans LMG 24798 [NGKC]
134620
134533
-
Ser
GCT
[ENA]
¡û
>W1910926853
NIJF01000057
Bacillota
Bacillus sp. P14.5 [NIJF]
1868
1958
+
Ser
GCT
[ENA]
¡û
>W1911299553
NTUP01000061
Bacillota
Bacillus sp. AFS015802 [NTUP]
65472
65382
-
Ser
GCT
[ENA]
¡û
>W1911493456
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
750
839
+
Ser
GCT
[ENA]
¡û
>W1911533904
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
27056
26967
-
Ser
GCT
[ENA]
¡û
>W1911551508
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
779
868
+
Ser
GCT
[ENA]
¡û
>W1911631465
PUFE01000020
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
1308
1397
+
Ser
GCT
[ENA]
¡û
>W1911706065
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
26910
26821
-
Ser
GCT
[ENA]
¡û
>W1810057731
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
1715684
1715774
+
Ser
GCT
[ENA]
¡û
>W1810057778
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
605767
605677
-
Ser
GCT
[ENA]
¡û
>W1810367766
PVYY01000012
Bacillota
Bacillus sp. V-88 [PVYY]
1605
1515
-
Ser
GCT
[ENA]
¡û
>W1810367788
PVYY01000023
Bacillota
Bacillus sp. V-88 [PVYY]
1366
1456
+
Ser
GCT
[ENA]
¡û
>WENV11100304
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
652
741
+
Ser
GCT
[ENA]
¡û
>W1511344737
JRFY01000147
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
394
305
-
Ser
GCT
[ENA]
¡û
>W1511402313
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
713
802
+
Ser
GCT
[ENA]
¡û
>C161093442
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
482925
483014
+
Ser
GCT
-
¡û
>C161100151
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
577169
577258
+
Ser
GCT
[Ensembl]
¡û
>W121008321
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
656
745
+
Ser
GCT
[ENA]
¡û
>W1610030955
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
96348
96259
-
Ser
GCT
[ENA]
¡û
>W1610031745
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
20146
20057
-
Ser
GCT
[ENA]
¡û
>W1610032447
AYZQ01000012
Bacillota
Lacticaseibacillus brantae DSM 23927 [AYZQ]
121
32
-
Ser
GCT
[ENA]
¡û
>W1610034183
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
118
29
-
Ser
GCT
[ENA]
¡û
>W1610035833
AZEU01000275
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [AZEU]
9398
9309
-
Ser
GCT
[ENA]
¡û
>W1610035962
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
703
792
+
Ser
GCT
[ENA]
¡û
>W1610036410
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
712
801
+
Ser
GCT
[ENA]
¡û
>W1610037224
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
13886
13797
-
Ser
GCT
[ENA]
¡û
>W1610044129
BBAH01000096
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [BBAH]
1033
1122
+
Ser
GCT
[ENA]
¡û
>W1610045572
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
656
745
+
Ser
GCT
[ENA]
¡û
>W1610045913
BBBX01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 [BBBX]
1117
1206
+
Ser
GCT
[ENA]
¡û
>W1610073088
BCVQ01000084
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
6
96
+
Ser
GCT
[ENA]
¡û
>W1610529588
JQCE01000073
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
10762
10673
-
Ser
GCT
[ENA]
¡û
>W1610638667
LIXZ01000009
Bacillota
Rossellomorea vietnamensis [LIXZ]
666
756
+
Ser
GCT
[ENA]
¡û
>W1610767592
LNQI01000014
Bacillota
[Bacillus] enclensis [LNQI]
73298
73388
+
Ser
GCT
[ENA]
¡û
>W1610867232
LQXM01000003
Bacillota
Rossellomorea aquimaris TF-12 [LQXM]
15837
15927
+
Ser
GCT
[ENA]
¡û
>W1610867257
LQXM01000004
Bacillota
Rossellomorea aquimaris TF-12 [LQXM]
10872
10782
-
Ser
GCT
[ENA]
¡û
>W1610909573
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
751
840
+
Ser
GCT
[ENA]
¡û
>W1710027907
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
96348
96259
-
Ser
GCT
[ENA]
¡û
>W1710028672
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
20146
20057
-
Ser
GCT
[ENA]
¡û
>W1710029269
AYZQ01000012
Bacillota
Lacticaseibacillus brantae DSM 23927 [AYZQ]
121
32
-
Ser
GCT
[ENA]
¡û
>W1710031310
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
118
29
-
Ser
GCT
[ENA]
¡û
>W1710032872
AZEU01000275
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [AZEU]
9398
9309
-
Ser
GCT
[ENA]
¡û
>W1710033001
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
703
792
+
Ser
GCT
[ENA]
¡û
>W1710033449
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
712
801
+
Ser
GCT
[ENA]
¡û
>W1710034263
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
13886
13797
-
Ser
GCT
[ENA]
¡û
>W1710041289
BBAH01000096
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [BBAH]
1033
1122
+
Ser
GCT
[ENA]
¡û
>W1710042413
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
656
745
+
Ser
GCT
[ENA]
¡û
>W1710042754
BBBX01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 [BBBX]
1117
1206
+
Ser
GCT
[ENA]
¡û
>W1710069538
BCUW01000027
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
48131
48041
-
Ser
GCT
[ENA]
¡û
>W1710070206
BCVQ01000084
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
6
96
+
Ser
GCT
[ENA]
¡û
>W1710631178
JQCE01000073
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
10762
10673
-
Ser
GCT
[ENA]
¡û
>W1710774498
LIXZ01000009
Bacillota
Rossellomorea vietnamensis [LIXZ]
666
756
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK