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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205112 (26 seq.)
>W1710797296
LJSY01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
12121
12197
+
Arg
CCT
[ENA]
¡û
>W131241998
BASI01000001
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
1007918
1007842
-
Arg
CCT
[ENA]
¡û
>W1711709201
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3977018
3977094
+
Arg
CCT
[ENA]
¡û
>W1711709269
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
3067006
3067082
+
Arg
CCT
[ENA]
¡û
>C171035290
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
2485874
2485950
+
Arg
CCT
-
¡û
>C171105939
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
352608
352532
-
Arg
CCT
-
¡û
>w014862
AAOT01000027
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
17788
17710
-
Arg
CCT
[ENA]
¡û
>W141063301
APGJ01000003
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
346470
346546
+
Arg
CCT
[ENA]
¡û
>WENV181233948
OFET01000406
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1402
1478
+
Arg
CCT
[ENA]
¢þ
>WENV181234504
OFEU01000227
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
47594
47518
-
Arg
CCT
[ENA]
¢þ
>WENV183513574
OMKS01005999
[OMKS] sediment metagenome; hot spring sediment
77
1
-
Arg
CCT
[ENA]
¢þ
>WENV183514781
OMKS01031556
[OMKS] sediment metagenome; hot spring sediment
1
77
+
Arg
CCT
[ENA]
¢þ
>WENV183515964
OMKS01112539
[OMKS] sediment metagenome; hot spring sediment
864
788
-
Arg
CCT
[ENA]
¢þ
>WENV170682578
LFIK01000425
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6445
6369
-
Arg
CCT
[ENA]
¢þ
>W1910443276
FWFY01000002
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
434836
434912
+
Arg
CCT
[ENA]
¡û
>W1810400366
PYGB01000001
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
108356
108280
-
Arg
CCT
[ENA]
¡û
>W1810672093
QJTE01000002
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
424233
424309
+
Arg
CCT
[ENA]
¡û
>C151006164
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
855341
855265
-
Arg
CCT
[Ensembl]
¡û
>C161001486
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
50710
50634
-
Arg
CCT
[Ensembl]
¡û
>C161087747
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
1010399
1010323
-
Arg
CCT
-
¡û
>W1610526256
JPPB01000337
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
1317
1241
-
Arg
CCT
[ENA]
¡û
>W1610661253
LJSY01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
12121
12197
+
Arg
CCT
[ENA]
¡û
>W1710514197
FNAT01000003
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
353292
353368
+
Arg
CCT
[ENA]
¡û
>W1710552375
FOGU01000009
Alphaproteobacteria
Tranquillimonas rosea roseus [FOGU]
24477
24553
+
Arg
CCT
[ENA]
¡û
>W1710595116
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
2546976
2546900
-
Arg
CCT
[ENA]
¡û
>W1710627557
JPPB01000337
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
1317
1241
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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