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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205147 (11 seq.)
>WENV180042889
LQAG01011549
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
294
368
+
Ala
TGC
[ENA]
¢þ
>WENV180044039
LQAJ01000586
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3346
3273
-
Ala
TGC
[ENA]
¢þ
>WENV180346747
OBLN01263860
[OBLN] sediment metagenome; sediment
229
156
-
Ala
TGC
[ENA]
¢þ
>WENV183513864
OMKS01008689
[OMKS] sediment metagenome; hot spring sediment
3112
3185
+
Ala
TGC
[ENA]
¢þ
>WENV170657458
JTFO01157992
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
138
65
-
Ala
TGC
[ENA]
¢þ
>WENV170723308
LSQX01263792
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
940
867
-
Ala
TGC
[ENA]
¢þ
>C11121301
CP002541
Spirochaetota
Sphaerochaeta globosa str. Buddy [CP002541]
1350666
1350739
+
Ala
TGC
[Ensembl]
¡û
>C11121318
CP002541
Spirochaetota
Sphaerochaeta globosa str. Buddy [CP002541]
3111243
3111170
-
Ala
TGC
[Ensembl]
¡û
>C121007049
CP003155
Spirochaetota
Sphaerochaeta pleomorpha str. Grapes [CP003155]
2311693
2311766
+
Ala
TGC
[Ensembl]
¡û
>C121007070
CP003155
Spirochaetota
Sphaerochaeta pleomorpha str. Grapes [CP003155]
792363
792290
-
Ala
TGC
[Ensembl]
¡û
>C121007071
CP003155
Spirochaetota
Sphaerochaeta pleomorpha str. Grapes [CP003155]
666059
665986
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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