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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20518 (41 seq.)
>W1710860670
LMDB01000022
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
510238
510328
+
Ser
GGA
[ENA]
¡û
>W1710867211
LMIC01000002
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179457
179367
-
Ser
GGA
[ENA]
¡û
>C171065613
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
366383
366293
-
Ser
GGA
-
¡û
>C171084585
CP018811
Betaproteobacteria
Paraburkholderia sp. SOS3 [CP018811, CP018812]
3142705
3142615
-
Ser
GGA
-
¡û
>C171130522
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1431178
1431088
-
Ser
GGA
-
¡û
>W131225112
AUDI01000001
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
417326
417236
-
Ser
GGA
[ENA]
¡û
>WENV180019183
FTBI01001537
[FTBI] metagenome; soil
322
412
+
Ser
GGA
[ENA]
¢þ
>WENV180022303
FTFY01000283
[FTFY] metagenome; soil
559
649
+
Ser
GGA
[ENA]
¢þ
>WENV180026716
FTIU01038733
[FTIU] metagenome; soil
891
981
+
Ser
GGA
[ENA]
¢þ
>WENV180029896
FTJL01015597
[FTJL] metagenome; soil
426
516
+
Ser
GGA
[ENA]
¢þ
>WENV180035905
FTLB01046901
[FTLB] metagenome; soil
596
506
-
Ser
GGA
[ENA]
¢þ
>WENV180271015
OBEQ012228349
[OBEQ] groundwater metagenome; groundwater
922
1012
+
Ser
GGA
[ENA]
¢þ
>W141093969
AVCC01000037
Betaproteobacteria
Herminiimonas sp. CN [AVCC]
30125
30035
-
Ser
GGA
[ENA]
¡û
>WENV170558852
CXWL01095715
[CXWL] groundwater metagenome; biofilm material
9108
9018
-
Ser
GGA
[ENA]
¢þ
>WENV170558970
CXWL01103089
[CXWL] groundwater metagenome; biofilm material
3544
3634
+
Ser
GGA
[ENA]
¢þ
>WENV170558996
CXWL01105225
[CXWL] groundwater metagenome; biofilm material
4896
4986
+
Ser
GGA
[ENA]
¢þ
>WENV170559244
CXWL01115731
[CXWL] groundwater metagenome; biofilm material
2579
2666
+
Ser
GGA
[ENA]
¢þ
>WENV170689839
LFRM01313908
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
42
132
+
Ser
GGA
[ENA]
¢þ
>WENV170996798
MWWF01417452
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
153
243
+
Ser
GGA
[ENA]
¢þ
>C181102668
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
2085836
2085926
+
Ser
GGA
-
¡û
>W1910225286
FMSH01000019
Betaproteobacteria
Cupriavidus necator B9 [FMSH]
5437
5527
+
Ser
GGA
[ENA]
¡û
>W1911572399
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1008324
1008234
-
Ser
GGA
[ENA]
¡û
>W1911802755
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
2602259
2602169
-
Ser
GGA
[ENA]
¡û
>W1911802844
QYUP01000061
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
5550
5460
-
Ser
GGA
[ENA]
¡û
>C151062617
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
4360150
4360060
-
Ser
GGA
[Ensembl]
¡û
>C11105084
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3909016
3908926
-
Ser
GGA
[Ensembl]
¡û
>C161053605
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4376245
4376155
-
Ser
GGA
[Ensembl]
¡û
>C161053704
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4266836
4266746
-
Ser
GGA
[Ensembl]
¡û
>C161053804
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4343178
4343088
-
Ser
GGA
[Ensembl]
¡û
>W1610093123
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1610163417
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1610723016
LMDB01000022
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
510238
510328
+
Ser
GGA
[ENA]
¡û
>W1610729557
LMIC01000002
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179457
179367
-
Ser
GGA
[ENA]
¡û
>W1710096331
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1710165084
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1710556450
FOKF01000014
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
33623
33533
-
Ser
GGA
[ENA]
¡û
>W1710557314
FOKX01000001
Betaproteobacteria
Cupriavidus sp. OV038 [FOKX]
403136
403046
-
Ser
GGA
[ENA]
¡û
>W1710557545
FOLC01000031
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
37017
36927
-
Ser
GGA
[ENA]
¡û
>W1710564236
FOQI01000017
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
111999
111909
-
Ser
GGA
[ENA]
¡û
>W1710572170
FOWM01000001
Betaproteobacteria
Cupriavidus sp. OV096 [FOWM]
403136
403046
-
Ser
GGA
[ENA]
¡û
>W1710586003
FQWU01000002
Betaproteobacteria
Massilia sp. CF038 [FQWU]
1422906
1422816
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK