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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20521 (68 seq.)
>W1710877117
LMPV01000003
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
6473
6383
-
Ser
TGA
[ENA]
¡û
>W1710877118
LMPV01000003
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
6343
6253
-
Ser
TGA
[ENA]
¡û
>W1710909413
LNQL01000010
Bacillota
Exiguobacterium enclense [LNQL]
7717
7807
+
Ser
TGA
[ENA]
¡û
>W1710909414
LNQL01000010
Bacillota
Exiguobacterium enclense [LNQL]
7848
7938
+
Ser
TGA
[ENA]
¡û
>W1711116957
LUCU01000001
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
6613
6523
-
Ser
TGA
[ENA]
¡û
>W1711116958
LUCU01000001
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
6483
6393
-
Ser
TGA
[ENA]
¡û
>W1711166814
LVVL01000003
Bacillota
Exiguobacterium undae [LVVL]
6431
6341
-
Ser
TGA
[ENA]
¡û
>W1711166815
LVVL01000003
Bacillota
Exiguobacterium undae [LVVL]
6305
6215
-
Ser
TGA
[ENA]
¡û
>W131241537
BARY01000001
Bacillota
Exiguobacterium sp. OS-77 [BARY]
6393
6303
-
Ser
TGA
[ENA]
¡û
>W131241538
BARY01000001
Bacillota
Exiguobacterium sp. OS-77 [BARY]
6262
6172
-
Ser
TGA
[ENA]
¡û
>W1711603287
MOLV01000041
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
6451
6361
-
Ser
TGA
[ENA]
¡û
>W1711603288
MOLV01000041
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
6325
6235
-
Ser
TGA
[ENA]
¡û
>W1711632678
MPSZ01000017
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
6324
6234
-
Ser
TGA
[ENA]
¡û
>W1711632679
MPSZ01000017
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
6194
6104
-
Ser
TGA
[ENA]
¡û
>W1712017320
NESR01000033
Bacillota
Kurthia gibsonii [NESR]
6456
6366
-
Ser
TGA
[ENA]
¡û
>W1712017321
NESR01000033
Bacillota
Kurthia gibsonii [NESR]
6326
6236
-
Ser
TGA
[ENA]
¡û
>PL171001635
CP022237
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed1
18909
18999
+
Ser
TGA
[ENA]
¡û
>PL171001636
CP022237
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed1
19035
19125
+
Ser
TGA
[ENA]
¡û
>C171040514
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
450334
450424
+
Ser
TGA
-
¡û
>C171040515
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
450464
450554
+
Ser
TGA
-
¡û
>C171072089
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
23199
23289
+
Ser
TGA
-
¡û
>C171072090
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
23330
23420
+
Ser
TGA
-
¡û
>w003680
AADW02000023
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
8280
8193
-
Ser
TGA
[ENA]
¡û
>w003679
AADW02000023
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
8406
8319
-
Ser
TGA
[ENA]
¡û
>C08004768
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
23287
23377
+
Ser
TGA
[Ensembl]
¡û
>C08004769
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
23413
23503
+
Ser
TGA
[Ensembl]
¡û
>WENV170022206
BCQK01001614
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
3057
3147
+
Ser
TGA
[ENA]
¢þ
>W141484767
JFYW01000004
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
7997
8087
+
Ser
TGA
[ENA]
¡û
>W141563089
JHZS01000007
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
8002
8092
+
Ser
TGA
[ENA]
¡û
>W141563090
JHZS01000008
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
5
95
+
Ser
TGA
[ENA]
¡û
>W141563164
JHZU01000003
Bacillota
Exiguobacterium undae 190-11 [JHZU]
8099
8009
-
Ser
TGA
[ENA]
¡û
>W141563165
JHZU01000003
Bacillota
Exiguobacterium undae 190-11 [JHZU]
7973
7883
-
Ser
TGA
[ENA]
¡û
>W141563235
JHZV01000003
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
6345
6255
-
Ser
TGA
[ENA]
¡û
>W141701488
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1428001
1428091
+
Ser
TGA
[ENA]
¡û
>W141701489
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1428127
1428217
+
Ser
TGA
[ENA]
¡û
>W141730927
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2742803
2742893
+
Ser
TGA
[ENA]
¡û
>W141730928
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2742934
2743024
+
Ser
TGA
[ENA]
¡û
>W141730977
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1588922
1589012
+
Ser
TGA
[ENA]
¡û
>W141730978
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1589048
1589138
+
Ser
TGA
[ENA]
¡û
>C141009950
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3152463
3152553
+
Ser
TGA
[Ensembl]
¡û
>C141009951
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3152594
3152684
+
Ser
TGA
[Ensembl]
¡û
>W1911770696
QXJB01000016
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
6309
6219
-
Ser
TGA
[ENA]
¡û
>W1911770697
QXJB01000016
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
6182
6092
-
Ser
TGA
[ENA]
¡û
>W1810760559
QPKF01000014
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
6750
6660
-
Ser
TGA
[ENA]
¡û
>W1810760560
QPKF01000014
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
6624
6534
-
Ser
TGA
[ENA]
¡û
>W1810760996
QPKS01000019
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
7680
7770
+
Ser
TGA
[ENA]
¡û
>W1511699964
LGIW01000009
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
6440
6350
-
Ser
TGA
[ENA]
¡û
>W1511699965
LGIW01000009
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
6310
6220
-
Ser
TGA
[ENA]
¡û
>C131001786
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
23239
23329
+
Ser
TGA
[Ensembl]
¡û
>C131001787
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
23365
23455
+
Ser
TGA
[Ensembl]
¡û
>W1610589637
LDQV01000040
Bacillota
Exiguobacterium indicum [LDQV]
7681
7771
+
Ser
TGA
[ENA]
¡û
>W1610589638
LDQV01000040
Bacillota
Exiguobacterium indicum [LDQV]
7812
7902
+
Ser
TGA
[ENA]
¡û
>W1610589684
LDQW01000041
Bacillota
Exiguobacterium indicum [LDQW]
6404
6314
-
Ser
TGA
[ENA]
¡û
>W1610589685
LDQW01000041
Bacillota
Exiguobacterium indicum [LDQW]
6273
6183
-
Ser
TGA
[ENA]
¡û
>W1610739463
LMPV01000003
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
6473
6383
-
Ser
TGA
[ENA]
¡û
>W1610739464
LMPV01000003
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
6343
6253
-
Ser
TGA
[ENA]
¡û
>W1610767772
LNQL01000010
Bacillota
Exiguobacterium enclense [LNQL]
7717
7807
+
Ser
TGA
[ENA]
¡û
>W1610767773
LNQL01000010
Bacillota
Exiguobacterium enclense [LNQL]
7848
7938
+
Ser
TGA
[ENA]
¡û
>W1610928316
LUCU01000001
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
6613
6523
-
Ser
TGA
[ENA]
¡û
>W1610928317
LUCU01000001
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
6483
6393
-
Ser
TGA
[ENA]
¡û
>W1610977354
LVVL01000003
Bacillota
Exiguobacterium undae [LVVL]
6431
6341
-
Ser
TGA
[ENA]
¡û
>W1610977355
LVVL01000003
Bacillota
Exiguobacterium undae [LVVL]
6305
6215
-
Ser
TGA
[ENA]
¡û
>W1710511248
FMYN01000010
Bacillota
Exiguobacterium enclense [FMYN]
7717
7807
+
Ser
TGA
[ENA]
¡û
>W1710511249
FMYN01000010
Bacillota
Exiguobacterium enclense [FMYN]
7848
7938
+
Ser
TGA
[ENA]
¡û
>W1710708917
LDQV01000040
Bacillota
Exiguobacterium indicum [LDQV]
7681
7771
+
Ser
TGA
[ENA]
¡û
>W1710708918
LDQV01000040
Bacillota
Exiguobacterium indicum [LDQV]
7812
7902
+
Ser
TGA
[ENA]
¡û
>W1710708964
LDQW01000041
Bacillota
Exiguobacterium indicum [LDQW]
6404
6314
-
Ser
TGA
[ENA]
¡û
>W1710708965
LDQW01000041
Bacillota
Exiguobacterium indicum [LDQW]
6273
6183
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK