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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20574 (42 seq.)
>W1710934473
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
247322
247232
-
Ser
GGA
[ENA]
¡û
>W1710934495
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
34495
34585
+
Ser
GGA
[ENA]
¡û
>W1711147369
LVJO01000026
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
62078
61988
-
Ser
GGA
[ENA]
¡û
>W1711149072
LVLD01000016
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
39364
39274
-
Ser
GGA
[ENA]
¡û
>W1711149108
LVLE01000014
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
27530
27440
-
Ser
GGA
[ENA]
¡û
>W1711149151
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
27367
27277
-
Ser
GGA
[ENA]
¡û
>W1711149183
LVLG01000006
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
21127
21037
-
Ser
GGA
[ENA]
¡û
>W1711272441
LZFI01000006
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
108642
108732
+
Ser
GGA
[ENA]
¡û
>W1711281994
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1287138
1287228
+
Ser
GGA
[ENA]
¡û
>W1711282027
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
755409
755499
+
Ser
GGA
[ENA]
¡û
>W1711421590
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
147628
147718
+
Ser
GGA
[ENA]
¡û
>W1711625785
MPIY01000007
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
109634
109544
-
Ser
GGA
[ENA]
¡û
>W1711932811
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
1047395
1047305
-
Ser
GGA
[ENA]
¡û
>W1712077037
NGUO01000011
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
61669
61759
+
Ser
GGA
[ENA]
¡û
>W1712077071
NGUP01000004
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
44519
44429
-
Ser
GGA
[ENA]
¡û
>C171035126
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1292494
1292404
-
Ser
GGA
-
¡û
>C171035164
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1311552
1311462
-
Ser
GGA
-
¡û
>C171035202
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1292263
1292173
-
Ser
GGA
-
¡û
>C017393
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1187024
1186934
-
Ser
GGA
[Ensembl]
¡û
>WENV180391167
OBPM01026347
[OBPM] marine metagenome; ENVO:00002010
340
250
-
Ser
GGA
[ENA]
¢þ
>C08007615
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
655358
655448
+
Ser
GGA
[Ensembl]
¡û
>WENV170598983
FUWD010057285
[FUWD] metagenome; unknown
388
298
-
Ser
GGA
[ENA]
¢þ
>WENV170606211
FUWD010632019
[FUWD] metagenome; unknown
227
137
-
Ser
GGA
[ENA]
¢þ
>WENV170624888
FUWD013188414
[FUWD] metagenome; unknown
516
426
-
Ser
GGA
[ENA]
¢þ
>C181218866
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
534122
534212
+
Ser
GGA
-
¡û
>C181218901
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
296943
297033
+
Ser
GGA
-
¡û
>C181218960
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
954193
954103
-
Ser
GGA
-
¡û
>C181219015
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
817748
817838
+
Ser
GGA
-
¡û
>C181219063
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1689719
1689629
-
Ser
GGA
-
¡û
>W09106270
AAUC01000001
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
62707
62617
-
Ser
GGA
[ENA]
¡û
>W09107510
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
938190
938100
-
Ser
GGA
[ENA]
¡û
>C141003789
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
675107
675197
+
Ser
GGA
[Ensembl]
¡û
>W1911279065
NTGB01000001
Betaproteobacteria
Polynucleobacter rarus MT-CBb6A5 [NTGB]
1368710
1368620
-
Ser
GGA
[ENA]
¡û
>W1810102020
PGTX01000006
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
9425
9335
-
Ser
GGA
[ENA]
¡û
>W1810699187
QMCH01000002
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
242497
242587
+
Ser
GGA
[ENA]
¡û
>C151025643
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
683166
683256
+
Ser
GGA
[Ensembl]
¡û
>C161092391
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1238551
1238461
-
Ser
GGA
[Ensembl]
¡û
>WENV057269
AACY023289898
Marine microbial communities from Global Ocean Sampling (GOS)
572
480
-
Ser
GGA
[ENA]
>WENV058188
AACY023320520
Marine microbial communities from Global Ocean Sampling (GOS)
1174
1082
-
Ser
GGA
[ENA]
>W1610792004
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
247322
247232
-
Ser
GGA
[ENA]
¡û
>W1610792026
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
34495
34585
+
Ser
GGA
[ENA]
¡û
>W1710605887
FWXJ01000002
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
290660
290750
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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