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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205752 (23 seq.)
>W131111739
APMN01000006
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
7090
7014
-
Met
CAT
[ENA]
¡û
>W131111783
APMO01000018
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
312354
312430
+
Met
CAT
[ENA]
¡û
>C019073
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
111947
112023
+
Met
CAT
[Ensembl]
¡û
>C019383
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
49097
49021
-
Met
CAT
[Ensembl]
¡û
>w005059
AAFF01000001
Alphaproteobacteria
Rickettsia canadensis str. McKiel [AAFF]
109831
109909
+
Met
CAT
[ENA]
¡û
>C08008051
CP000409
Alphaproteobacteria
Rickettsia canadensis str. McKiel [CP000409]
109832
109908
+
Met
CAT
[Ensembl]
¡û
>W141264821
CCER01000007
Alphaproteobacteria
Rickettsia aeschlimannii [CCER]
199784
199860
+
Met
CAT
[ENA]
¡û
>WENV170022605
BCQK01025793
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
816
892
+
Met
CAT
[ENA]
¢þ
>C191225776
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
49097
49021
-
Met
CAT
-
¡û
>C11118784
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
111960
112036
+
Met
CAT
[Ensembl]
¡û
>C121010369
CP003304
Alphaproteobacteria
Rickettsia canadensis str. CA410 [CP003304]
110662
110738
+
Met
CAT
[Ensembl]
¡û
>C121011271
CP003340
Alphaproteobacteria
Rickettsia montanensis str. OSU 85-930 [CP003340]
854108
854184
+
Met
CAT
[Ensembl]
¡û
>C121012152
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
110146
110222
+
Met
CAT
[Ensembl]
¡û
>C121012185
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
111945
112021
+
Met
CAT
[Ensembl]
¡û
>C121012218
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
111955
112031
+
Met
CAT
[Ensembl]
¡û
>C121012251
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
110149
110225
+
Met
CAT
[Ensembl]
¡û
>C121012288
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
454016
454092
+
Met
CAT
[Ensembl]
¡û
>C121012379
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
49097
49021
-
Met
CAT
[Ensembl]
¡û
>C121012412
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
49064
48988
-
Met
CAT
[Ensembl]
¡û
>C161030374
CP010969
Alphaproteobacteria
Rickettsia conorii subsp. raoultii Khabarovsk [CP010969]
139143
139219
+
Met
CAT
[Ensembl]
¡û
>C161078723
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
111957
112033
+
Met
CAT
-
¡û
>C131014603
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
72095
72019
-
Met
CAT
[Ensembl]
¡û
>C131014625
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
657243
657167
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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