This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205778 (29 seq.)
>WENV180345356
OBLM01296178
[OBLM] soil metagenome; soil
79
155
+
Asp
GTC
[ENA]
¢þ
>WENV181384959
OFRI01022652
[OFRI] wastewater metagenome; Exp Tend VB 90WW
217
141
-
Asp
GTC
[ENA]
¢þ
>WENV183735998
PJUB01027367
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
220
296
+
Asp
GTC
[ENA]
¢þ
>WENV170023031
BCQK01108070
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
44
120
+
Asp
GTC
[ENA]
¢þ
>WENV170283527
CERU01028841
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7654
7578
-
Asp
GTC
[ENA]
¢þ
>WENV170436265
CEUT01035811
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1186
1262
+
Asp
GTC
[ENA]
¢þ
>WENV170469140
CEVF01088995
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4087
4163
+
Asp
GTC
[ENA]
¢þ
>WENV170563669
CZCB01024630
[CZCB] anaerobic digester metagenome; anaerobic digester
600
676
+
Asp
GTC
[ENA]
¢þ
>WENV170578194
FUFK010004398
[FUFK] metagenome; unknown
693
617
-
Asp
GTC
[ENA]
¢þ
>WENV170578430
FUFK010017050
[FUFK] metagenome; unknown
21102
21178
+
Asp
GTC
[ENA]
¢þ
>WENV170579220
FUFK010038315
[FUFK] metagenome; unknown
122226
122150
-
Asp
GTC
[ENA]
¢þ
>WENV170579628
FUFK010040095
[FUFK] metagenome; unknown
1502
1578
+
Asp
GTC
[ENA]
¢þ
>WENV170580044
FUFK010043833
[FUFK] metagenome; unknown
6394
6318
-
Asp
GTC
[ENA]
¢þ
>WENV170583184
FUFK010125489
[FUFK] metagenome; unknown
398
474
+
Asp
GTC
[ENA]
¢þ
>WENV170583189
FUFK010125835
[FUFK] metagenome; unknown
393
469
+
Asp
GTC
[ENA]
¢þ
>WENV170589639
FUFK010658107
[FUFK] metagenome; unknown
10
86
+
Asp
GTC
[ENA]
¢þ
>WENV170590694
FUFK010731123
[FUFK] metagenome; unknown
1337
1261
-
Asp
GTC
[ENA]
¢þ
>WENV170591168
FUFK010753758
[FUFK] metagenome; unknown
130
206
+
Asp
GTC
[ENA]
¢þ
>WENV170593259
FUFK010854153
[FUFK] metagenome; unknown
362
438
+
Asp
GTC
[ENA]
¢þ
>C181133732
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
518272
518348
+
Asp
GTC
-
¡û
>C181133733
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
518398
518474
+
Asp
GTC
-
¡û
>C181133735
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
518585
518661
+
Asp
GTC
-
¡û
>C181133737
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
518791
518867
+
Asp
GTC
-
¡û
>C181185200
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
888485
888561
+
Asp
GTC
-
¡û
>C181185204
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
1628007
1628083
+
Asp
GTC
-
¡û
>C181185206
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
1652185
1652261
+
Asp
GTC
-
¡û
>C181185236
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
1182347
1182271
-
Asp
GTC
-
¡û
>W1910637734
LQXP01000014
Gammaproteobacteria
Acinetobacter sp. CFCC 11171 [LQXP]
80030
80106
+
Asp
GTC
[ENA]
¡û
>W1910637765
LQXP01000150
Gammaproteobacteria
Acinetobacter sp. CFCC 11171 [LQXP]
28
104
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK