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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20603 (63 seq.)
>W1710877840
LMQL01000010
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
363761
363671
-
Ser
GGA
[ENA]
¡û
>W1711385098
MEDS01000001
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
49238
49148
-
Ser
GGA
[ENA]
¡û
>W1711504292
MKUK01000029
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
193854
193944
+
Ser
GGA
[ENA]
¡û
>W1711504582
MKUS01000006
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
123062
123152
+
Ser
GGA
[ENA]
¡û
>W1712105698
NISI01000001
Betaproteobacteria
Roseateles puraquae [NISI]
403307
403397
+
Ser
GGA
[ENA]
¡û
>W131237197
AUNN01000080
Betaproteobacteria
Pelomonas sp. JGI 001013-K11 [AUNN]
22972
22882
-
Ser
GGA
[ENA]
¡û
>W131178112
ARLH01000091
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
128718
128628
-
Ser
GGA
[ENA]
¡û
>WENV180099570
NMRC01018267
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
412
322
-
Ser
GGA
[ENA]
¢þ
>WENV180311696
OBJT01477224
[OBJT] soil metagenome; soil
59
149
+
Ser
GGA
[ENA]
¢þ
>WENV180693050
OCZS010964014
[OCZS] soil metagenome; soil
92
182
+
Ser
GGA
[ENA]
¢þ
>WENV181144988
OEHO01151332
[OEHO] metagenome; unknown
157
67
-
Ser
GGA
[ENA]
¢þ
>WENV181166752
OEIU01001619
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1738
1648
-
Ser
GGA
[ENA]
¢þ
>WENV181167081
OEIU01007897
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1875
1785
-
Ser
GGA
[ENA]
¢þ
>WENV181167655
OEIU01053802
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2
92
+
Ser
GGA
[ENA]
¢þ
>WENV181192877
OEPS011152067
[OEPS] soil metagenome; soil
57
147
+
Ser
GGA
[ENA]
¢þ
>WENV181227606
OFDN01021372
[OFDN] hot springs metagenome; Water
1920
2010
+
Ser
GGA
[ENA]
¢þ
>WENV181231407
OFEK01024848
[OFEK] activated sludge metagenome; Anaerobic digester
349
439
+
Ser
GGA
[ENA]
¢þ
>WENV181293581
OFHG01009429
[OFHG] soil metagenome; Clay
423
513
+
Ser
GGA
[ENA]
¢þ
>WENV181311121
OFJB01000040
[OFJB] sludge metagenome; sludge
9127
9037
-
Ser
GGA
[ENA]
¢þ
>WENV181311398
OFJB01001617
[OFJB] sludge metagenome; sludge
6917
6827
-
Ser
GGA
[ENA]
¢þ
>WENV181401122
OFSF01058948
[OFSF] wastewater metagenome; Exp Tend VB 100WW
178
88
-
Ser
GGA
[ENA]
¢þ
>WENV181402550
OFTY01003874
[OFTY] sludge metagenome; sludge
3073
3163
+
Ser
GGA
[ENA]
¢þ
>WENV181414794
OGCL01001394
[OGCL] hot springs metagenome; Hot spring water
8834
8924
+
Ser
GGA
[ENA]
¢þ
>WENV181731258
OGQD01000228
[OGQD] human gut metagenome; faeces
44083
43993
-
Ser
GGA
[ENA]
¢þ
>WENV181835926
OGVI01038524
[OGVI] freshwater metagenome; freshwater
379
469
+
Ser
GGA
[ENA]
¢þ
>WENV181843711
OGVU01052141
[OGVU] freshwater metagenome; freshwater
308
218
-
Ser
GGA
[ENA]
¢þ
>W141237795
BBJR01000057
Betaproteobacteria
Comamonas aquatica NBRC 14918 [BBJR]
984
894
-
Ser
GGA
[ENA]
¡û
>W141238154
BBJX01000014
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
10534
10624
+
Ser
GGA
[ENA]
¡û
>W141319072
JBOK01000028
Betaproteobacteria
Comamonas aquatica DA1877 [JBOK]
1478
1388
-
Ser
GGA
[ENA]
¡û
>WENV183672517
ORJL011177257
[ORJL] groundwater metagenome; groundwater
480
569
+
Ser
GGA
[ENA]
¢þ
>WENV183696797
OUME01000012
[OUME] metagenome; soil
12636
12726
+
Ser
GGA
[ENA]
¢þ
>WENV183703185
PDVJ01004662
[PDVJ] alkali sediment metagenome; glacial lake sediment
2385
2475
+
Ser
GGA
[ENA]
¢þ
>WENV170011840
APMI01095826
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2558
2648
+
Ser
GGA
[ENA]
¢þ
>WENV170653460
JRYJ01001430
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
11256
11166
-
Ser
GGA
[ENA]
¢þ
>C181159995
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
1961078
1960988
-
Ser
GGA
-
¡û
>C191182060
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2662712
2662802
+
Ser
GGA
-
¡û
>W09134949
ACVF01000001
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
175731
175641
-
Ser
GGA
[ENA]
¡û
>W141816780
JQKD01000002
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
506484
506574
+
Ser
GGA
[ENA]
¡û
>W1910699704
MERU01000002
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
775727
775637
-
Ser
GGA
[ENA]
¡û
>W1910972104
NKDB02000002
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
1174830
1174920
+
Ser
GGA
[ENA]
¡û
>W1911766108
QXDH01000005
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
340911
340821
-
Ser
GGA
[ENA]
¡û
>W1810088948
PGEI01000033
Betaproteobacteria
Comamonadaceae bacterium CD01 [PGEI]
7651
7741
+
Ser
GGA
[ENA]
¡û
>W1810088975
PGEJ01000005
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
211138
211228
+
Ser
GGA
[ENA]
¡û
>W1810580647
QETI01000016
Betaproteobacteria
Comamonas sp. JNW [QETI]
67427
67517
+
Ser
GGA
[ENA]
¡û
>W1810759941
QPJU01000012
Betaproteobacteria
Extensimonas vulgaris DSM 100911 [QPJU]
42884
42974
+
Ser
GGA
[ENA]
¡û
>W1810884619
QUMT01000001
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
1742363
1742273
-
Ser
GGA
[ENA]
¡û
>W1510016554
BBSJ01000032
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
13396
13486
+
Ser
GGA
[ENA]
¡û
>W1510016581
BBSJ01000051
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
363232
363142
-
Ser
GGA
[ENA]
¡û
>W10119620
ADWA01000043
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
26396
26486
+
Ser
GGA
[ENA]
¡û
>C11100590
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
2786410
2786500
+
Ser
GGA
[Ensembl]
¡û
>C11100638
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
3188650
3188740
+
Ser
GGA
[Ensembl]
¡û
>W11125886
ADWA01000043
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
26396
26486
+
Ser
GGA
[ENA]
¡û
>W1511516989
JXWN01000095
Betaproteobacteria
Comamonas aquatica CJG [JXWN]
211473
211563
+
Ser
GGA
[ENA]
¡û
>C161002839
CP016603
Betaproteobacteria
Comamonas aquatica CJG [CP016603]
2629789
2629879
+
Ser
GGA
-
¡û
>C161029940
CP010951
Betaproteobacteria
Ramlibacter tataouinensis 5-10 [CP010951]
4668306
4668396
+
Ser
GGA
[Ensembl]
¡û
>C161060291
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
3425820
3425910
+
Ser
GGA
[Ensembl]
¡û
>W1610062747
BCNT01000001
Betaproteobacteria
Comamonas terrae [BCNT]
261964
262054
+
Ser
GGA
[ENA]
¡û
>W1610074119
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
237395
237485
+
Ser
GGA
[ENA]
¡û
>W1610604908
LFRI01000341
Betaproteobacteria
Aquabacterium parvum [LFRI]
9458
9368
-
Ser
GGA
[ENA]
¡û
>W1610740186
LMQL01000010
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
363761
363671
-
Ser
GGA
[ENA]
¡û
>W1710060223
BCNT01000001
Betaproteobacteria
Comamonas terrae [BCNT]
261964
262054
+
Ser
GGA
[ENA]
¡û
>W1710071237
BCWK01000004
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
237395
237485
+
Ser
GGA
[ENA]
¡û
>W1710726351
LFRI01000341
Betaproteobacteria
Aquabacterium parvum [LFRI]
9458
9368
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK