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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20620 (94 seq.)
>W131177248
ARKQ01000038
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
234509
234419
-
Ser
TGA
[ENA]
¡û
>W1711499184
MKQD01000072
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
49012
49102
+
Ser
TGA
[ENA]
¡û
>W1711499185
MKQD01000072
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
49218
49308
+
Ser
TGA
[ENA]
¡û
>W1711767381
MUZU01000002
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
309538
309448
-
Ser
TGA
[ENA]
¡û
>W1711767411
MUZU01000019
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
19871
19961
+
Ser
TGA
[ENA]
¡û
>W1711767456
MUZV01000006
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
34231
34321
+
Ser
TGA
[ENA]
¡û
>W1711767485
MUZV01000019
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
48532
48622
+
Ser
TGA
[ENA]
¡û
>W1711947449
NBOC01000007
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
60956
61046
+
Ser
TGA
[ENA]
¡û
>W1711947450
NBOC01000007
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
111323
111413
+
Ser
TGA
[ENA]
¡û
>W1711947560
NBOE01000005
Gammaproteobacteria
Colwellia polaris [NBOE]
51150
51240
+
Ser
TGA
[ENA]
¡û
>W1711947561
NBOE01000005
Gammaproteobacteria
Colwellia polaris [NBOE]
130504
130414
-
Ser
TGA
[ENA]
¡û
>W1711947628
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
890296
890206
-
Ser
TGA
[ENA]
¡û
>W1711947629
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
841214
841124
-
Ser
TGA
[ENA]
¡û
>W1711947715
NBOG01000003
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
110024
110114
+
Ser
TGA
[ENA]
¡û
>W1711947716
NBOG01000003
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
168094
168184
+
Ser
TGA
[ENA]
¡û
>C171034472
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3990207
3990297
+
Ser
TGA
-
¡û
>C171034473
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
4113744
4113834
+
Ser
TGA
-
¡û
>C006798
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
2447928
2448018
+
Ser
TGA
[Ensembl]
¡û
>C006799
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
2448124
2448214
+
Ser
TGA
[Ensembl]
¡û
>C006857
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
2822264
2822174
-
Ser
TGA
[Ensembl]
¡û
>WENV182540204
OJAF01000032
[OJAF] seawater metagenome; Sea water
6091
6001
-
Ser
TGA
[ENA]
¢þ
>WENV182540213
OJAF01000182
[OJAF] seawater metagenome; Sea water
1523
1433
-
Ser
TGA
[ENA]
¢þ
>WENV182542537
OJAY01014656
[OJAY] seawater metagenome; Sea water
578
488
-
Ser
TGA
[ENA]
¢þ
>WENV182543454
OJBB01000339
[OJBB] seawater metagenome; Sea water
659
749
+
Ser
TGA
[ENA]
¢þ
>WENV182543460
OJBB01000428
[OJBB] seawater metagenome; Sea water
9825
9915
+
Ser
TGA
[ENA]
¢þ
>WENV182544742
OJBJ01000637
[OJBJ] seawater metagenome; Sea water
235
145
-
Ser
TGA
[ENA]
¢þ
>WENV182546452
OJBO01040872
[OJBO] seawater metagenome; Sea water
216
126
-
Ser
TGA
[ENA]
¢þ
>WENV182547082
OJBR01000734
[OJBR] seawater metagenome; Sea water
4473
4563
+
Ser
TGA
[ENA]
¢þ
>WENV182547404
OJBS01002598
[OJBS] seawater metagenome; Sea water
136
46
-
Ser
TGA
[ENA]
¢þ
>WENV182549205
OJBY01000001
[OJBY] seawater metagenome; Sea water
281038
280948
-
Ser
TGA
[ENA]
¢þ
>WENV182549220
OJBY01000010
[OJBY] seawater metagenome; Sea water
160652
160742
+
Ser
TGA
[ENA]
¢þ
>WENV182558605
OJDN01000009
[OJDN] seawater metagenome; Sea water
65894
65804
-
Ser
TGA
[ENA]
¢þ
>WENV182558827
OJDN01005270
[OJDN] seawater metagenome; Sea water
1120
1030
-
Ser
TGA
[ENA]
¢þ
>WENV182564832
OJEF01009159
[OJEF] seawater metagenome; Sea water
763
673
-
Ser
TGA
[ENA]
¢þ
>WENV182565270
OJEH01001241
[OJEH] seawater metagenome; Sea water
5984
6074
+
Ser
TGA
[ENA]
¢þ
>WENV182565876
OJEI01000634
[OJEI] seawater metagenome; Sea water
7422
7512
+
Ser
TGA
[ENA]
¢þ
>WENV182568268
OJET01000011
[OJET] seawater metagenome; Sea water
93138
93228
+
Ser
TGA
[ENA]
¢þ
>WENV182568693
OJEW01000398
[OJEW] seawater metagenome; Sea water
1555
1645
+
Ser
TGA
[ENA]
¢þ
>WENV182574856
OJFS01004043
[OJFS] seawater metagenome; Sea water
2600
2690
+
Ser
TGA
[ENA]
¢þ
>WENV182575498
OJFV01000005
[OJFV] seawater metagenome; Sea water
35301
35211
-
Ser
TGA
[ENA]
¢þ
>WENV182575511
OJFV01000014
[OJFV] seawater metagenome; Sea water
195149
195239
+
Ser
TGA
[ENA]
¢þ
>WENV182576960
OJGC01000008
[OJGC] seawater metagenome; Sea water
51075
51165
+
Ser
TGA
[ENA]
¢þ
>WENV182584339
OJHG01000012
[OJHG] seawater metagenome; Sea water
70127
70217
+
Ser
TGA
[ENA]
¢þ
>WENV182584416
OJHG01000200
[OJHG] seawater metagenome; Sea water
36099
36189
+
Ser
TGA
[ENA]
¢þ
>WENV182585107
OJHH01001340
[OJHH] seawater metagenome; Sea water
2804
2894
+
Ser
TGA
[ENA]
¢þ
>WENV182585115
OJHH01001470
[OJHH] seawater metagenome; Sea water
1467
1557
+
Ser
TGA
[ENA]
¢þ
>WENV182587995
OJHO01000643
[OJHO] seawater metagenome; Sea water
11456
11546
+
Ser
TGA
[ENA]
¢þ
>WENV182590605
OJIJ01000261
[OJIJ] seawater metagenome; Sea water
7383
7473
+
Ser
TGA
[ENA]
¢þ
>WENV183055477
OLHD01000002
[OLHD] seawater metagenome; Sea water
283098
283188
+
Ser
TGA
[ENA]
¢þ
>WENV183055494
OLHD01000028
[OLHD] seawater metagenome; Sea water
9090
9000
-
Ser
TGA
[ENA]
¢þ
>WENV183056878
OLHJ01045999
[OLHJ] seawater metagenome; Sea water
77
167
+
Ser
TGA
[ENA]
¢þ
>WENV183057554
OLHL01008342
[OLHL] seawater metagenome; Sea water
379
469
+
Ser
TGA
[ENA]
¢þ
>WENV183057676
OLHM01000441
[OLHM] seawater metagenome; Sea water
3127
3037
-
Ser
TGA
[ENA]
¢þ
>WENV183057809
OLHM01006361
[OLHM] seawater metagenome; Sea water
467
557
+
Ser
TGA
[ENA]
¢þ
>WENV183057942
OLHN01000008
[OLHN] seawater metagenome; Sea water
70221
70311
+
Ser
TGA
[ENA]
¢þ
>WENV183059737
OLHV01001495
[OLHV] seawater metagenome; Sea water
3836
3746
-
Ser
TGA
[ENA]
¢þ
>WENV183060012
OLHW01003972
[OLHW] seawater metagenome; Sea water
1107
1197
+
Ser
TGA
[ENA]
¢þ
>WENV183522214
OMOM01000843
[OMOM] seawater metagenome; Sea water
3993
4083
+
Ser
TGA
[ENA]
¢þ
>WENV170704278
LLEJ01001141
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2500
2590
+
Ser
TGA
[ENA]
¢þ
>WENV170704285
LLEJ01001652
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1565
1655
+
Ser
TGA
[ENA]
¢þ
>WENV170780792
MAAB01022455
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
952
862
-
Ser
TGA
[ENA]
¢þ
>WENV170828583
MDSY01152256
[MDSY] marine metagenome; seawater
2133
2223
+
Ser
TGA
[ENA]
¢þ
>C181169933
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
2087796
2087886
+
Ser
TGA
-
¡û
>C181169964
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
2161658
2161568
-
Ser
TGA
-
¡û
>C191128344
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2191545
2191635
+
Ser
TGA
-
¡û
>C191128345
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2303295
2303385
+
Ser
TGA
-
¡û
>C191160572
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
3905770
3905860
+
Ser
TGA
-
¡û
>C191160573
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
3917484
3917574
+
Ser
TGA
-
¡û
>W1810155112
PJAI01000089
Gammaproteobacteria
Colwellia echini A3T [PJAI]
19959
20049
+
Ser
TGA
[ENA]
¡û
>W1810155114
PJAI01000089
Gammaproteobacteria
Colwellia echini A3T [PJAI]
114204
114114
-
Ser
TGA
[ENA]
¡û
>W1810155367
PJAQ01000043
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
214124
214214
+
Ser
TGA
[ENA]
¡û
>W1810155368
PJAQ01000043
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
233375
233465
+
Ser
TGA
[ENA]
¡û
>W1810155369
PJAQ01000043
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
312890
312800
-
Ser
TGA
[ENA]
¡û
>W1810155591
PJAU01000057
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
109122
109212
+
Ser
TGA
[ENA]
¡û
>W1810156011
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1592494
1592404
-
Ser
TGA
[ENA]
¡û
>W1810156012
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1592297
1592207
-
Ser
TGA
[ENA]
¡û
>W1810156013
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
1486170
1486080
-
Ser
TGA
[ENA]
¡û
>W1810735867
QOLD01000028
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
131559
131649
+
Ser
TGA
[ENA]
¡û
>W1810735913
QOLD01000081
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
733
643
-
Ser
TGA
[ENA]
¡û
>W1810887034
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
443776
443686
-
Ser
TGA
[ENA]
¡û
>W1810887035
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
442281
442191
-
Ser
TGA
[ENA]
¡û
>W1810887036
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
441022
440932
-
Ser
TGA
[ENA]
¡û
>W1810887077
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2255820
2255910
+
Ser
TGA
[ENA]
¡û
>W1810887078
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2257316
2257406
+
Ser
TGA
[ENA]
¡û
>W1810887105
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2780270
2780180
-
Ser
TGA
[ENA]
¡û
>W1810887125
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
2420146
2420056
-
Ser
TGA
[ENA]
¡û
>W1810887218
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2208888
2208798
-
Ser
TGA
[ENA]
¡û
>W1810887219
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2207393
2207303
-
Ser
TGA
[ENA]
¡û
>W1810887220
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
2206132
2206042
-
Ser
TGA
[ENA]
¡û
>W1511322980
JQED01000037
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
162369
162459
+
Ser
TGA
[ENA]
¡û
>W1511322981
JQED01000037
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
181125
181215
+
Ser
TGA
[ENA]
¡û
>W1511322988
JQED01000045
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
98858
98768
-
Ser
TGA
[ENA]
¡û
>W1710553215
FOHK01000008
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
185292
185382
+
Ser
TGA
[ENA]
¡û
>W1710553216
FOHK01000008
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
199016
199106
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK