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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20645 (38 seq.)
>W1711099822
LTKU01000097
Betaproteobacteria
Neisseria sp. HMSC064E01 [LTKU]
15543
15453
-
Ser
TGA
[ENA]
¡û
>W1711710955
MTAA01000005
Betaproteobacteria
Neisseria dumasiana 114725 [MTAA]
3930
3840
-
Ser
TGA
[ENA]
¡û
>W1711710992
MTAB01000003
Betaproteobacteria
Neisseria dumasiana 124861 [MTAB]
136879
136969
+
Ser
TGA
[ENA]
¡û
>W1711711037
MTAC01000001
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
4118
4028
-
Ser
TGA
[ENA]
¡û
>W1711712000
MTBL01000004
Betaproteobacteria
Neisseria canis [MTBL]
74279
74369
+
Ser
TGA
[ENA]
¡û
>W1711712058
MTBM01000003
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
212198
212288
+
Ser
TGA
[ENA]
¡û
>W1711712101
MTBN01000002
Betaproteobacteria
Neisseria animaloris [MTBN]
380024
380114
+
Ser
TGA
[ENA]
¡û
>WENV180733905
ODGZ01001304
[ODGZ] human metagenome; G_DNA_Supragingival plaque
8027
7937
-
Ser
TGA
[ENA]
¢þ
>WENV180751171
ODHS01024992
[ODHS] human metagenome; G_DNA_Supragingival plaque
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV180791513
ODIU01006667
[ODIU] human metagenome; G_DNA_Buccal mucosa
231
321
+
Ser
TGA
[ENA]
¢þ
>WENV180923795
ODTK01000184
[ODTK] human metagenome; G_DNA_Supragingival plaque
47352
47262
-
Ser
TGA
[ENA]
¢þ
>WENV180924421
ODTK01004733
[ODTK] human metagenome; G_DNA_Supragingival plaque
91
1
-
Ser
TGA
[ENA]
¢þ
>WENV180933521
ODTR01000394
[ODTR] human metagenome; G_DNA_Supragingival plaque
6429
6519
+
Ser
TGA
[ENA]
¢þ
>W141252066
CBRB010000905
Betaproteobacteria
Kingella kingae BB016 [CBRB]
16172
16262
+
Ser
TGA
[ENA]
¡û
>W141252766
CBRR010001035
Betaproteobacteria
Kingella kingae BB631 [CBRR]
16170
16260
+
Ser
TGA
[ENA]
¡û
>W141253025
CBRX010001034
Betaproteobacteria
Kingella kingae KK189 [CBRX]
16173
16263
+
Ser
TGA
[ENA]
¡û
>C181224109
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
1917286
1917376
+
Ser
TGA
-
¡û
>C191205894
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
1911518
1911608
+
Ser
TGA
-
¡û
>C191211082
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
545425
545515
+
Ser
TGA
-
¡û
>C191213672
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
819539
819449
-
Ser
TGA
-
¡û
>C191214474
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
1873832
1873742
-
Ser
TGA
-
¡û
>W1810226991
POXA01000003
Betaproteobacteria
Neisseria wadsworthii C2008000421 [POXA]
59055
58965
-
Ser
TGA
[ENA]
¡û
>W1810227200
POXE01000003
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
99189
99279
+
Ser
TGA
[ENA]
¡û
>W1810227262
POXF01000004
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
103080
103170
+
Ser
TGA
[ENA]
¡û
>W1810227409
POXI01000002
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
363365
363455
+
Ser
TGA
[ENA]
¡û
>W1810227877
POXR01000002
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
494853
494943
+
Ser
TGA
[ENA]
¡û
>W1810228043
POXU01000004
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
170532
170622
+
Ser
TGA
[ENA]
¡û
>W1810228435
POYC01000001
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
342697
342787
+
Ser
TGA
[ENA]
¡û
>W11175920
AFWQ01000021
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
73692
73782
+
Ser
TGA
[ENA]
¡û
>W11175987
AFWR01000037
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
69424
69334
-
Ser
TGA
[ENA]
¡û
>W11177462
AGAY01000016
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
1436
1346
-
Ser
TGA
[ENA]
¡û
>W11177523
AGAZ01000058
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
19098
19008
-
Ser
TGA
[ENA]
¡û
>C161109170
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
381426
381336
-
Ser
TGA
[Ensembl]
¡û
>W121060770
AJGB01000045
Betaproteobacteria
Kingella kingae PYKK081 [AJGB]
53749
53659
-
Ser
TGA
[ENA]
¡û
>W1610617736
LGYH01000008
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
121809
121899
+
Ser
TGA
[ENA]
¡û
>W1610617969
LGZA01000002
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
59163
59253
+
Ser
TGA
[ENA]
¡û
>W1710743598
LGYH01000008
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
121809
121899
+
Ser
TGA
[ENA]
¡û
>W1710744144
LGZA01000002
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
59163
59253
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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