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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20648 (62 seq.)
>W1711943730
NBED01000015
Bacillota
Ligilactobacillus salivarius [NBED]
91965
92054
+
Ser
CGA
[ENA]
¡û
>W1711943812
NBEF01000017
Bacillota
Ligilactobacillus salivarius [NBEF]
76133
76046
-
Ser
CGA
[ENA]
¡û
>W1711943997
NBEJ01000009
Bacillota
Ligilactobacillus salivarius [NBEJ]
221128
221215
+
Ser
CGA
[ENA]
¡û
>W1711944137
NBEM01000006
Bacillota
Ligilactobacillus salivarius [NBEM]
19153
19240
+
Ser
CGA
[ENA]
¡û
>W1711944227
NBEO01000008
Bacillota
Ligilactobacillus salivarius [NBEO]
279733
279820
+
Ser
CGA
[ENA]
¡û
>W1711944276
NBEP01000043
Bacillota
Ligilactobacillus salivarius [NBEP]
5676
5763
+
Ser
CGA
[ENA]
¡û
>W1711944423
NBES01000020
Bacillota
Ligilactobacillus salivarius [NBES]
65971
66058
+
Ser
CGA
[ENA]
¡û
>C171057143
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
1521091
1521004
-
Ser
CGA
-
¡û
>C171129018
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1635347
1635434
+
Ser
CGA
-
¡û
>WENV181428648
OGCW01000028
[OGCW] metagenome; Human gut stool
77246
77333
+
Ser
CGA
[ENA]
¢þ
>WENV181429077
OGCX01000002
[OGCX] metagenome; Human gut stool
120643
120556
-
Ser
CGA
[ENA]
¢þ
>WENV181454478
OGED01002962
[OGED] metagenome; Human gut stool
2716
2803
+
Ser
CGA
[ENA]
¢þ
>WENV181457185
OGEH01015197
[OGEH] metagenome; Human gut stool
351
264
-
Ser
CGA
[ENA]
¢þ
>WENV181457893
OGEJ01000017
[OGEJ] metagenome; Human gut stool
116915
116828
-
Ser
CGA
[ENA]
¢þ
>WENV181467865
OGES01000020
[OGES] metagenome; Human gut stool
1718
1631
-
Ser
CGA
[ENA]
¢þ
>WENV181483390
OGFK01003410
[OGFK] metagenome; Human gut stool
477
390
-
Ser
CGA
[ENA]
¢þ
>WENV181484652
OGFL01009036
[OGFL] metagenome; Human gut stool
2060
2147
+
Ser
CGA
[ENA]
¢þ
>WENV181494451
OGGB01001699
[OGGB] metagenome; Human gut stool
204
117
-
Ser
CGA
[ENA]
¢þ
>WENV181501374
OGGI01000158
[OGGI] metagenome; Human gut stool
77184
77271
+
Ser
CGA
[ENA]
¢þ
>WENV181505935
OGGM01000001
[OGGM] metagenome; Human gut stool
389531
389444
-
Ser
CGA
[ENA]
¢þ
>WENV181517491
OGGZ01008728
[OGGZ] metagenome; Human gut stool
2600
2687
+
Ser
CGA
[ENA]
¢þ
>WENV181518788
OGHB01000294
[OGHB] metagenome; Human gut stool
12611
12524
-
Ser
CGA
[ENA]
¢þ
>WENV181525063
OGHJ01000002
[OGHJ] metagenome; Human gut stool
166819
166732
-
Ser
CGA
[ENA]
¢þ
>WENV181539159
OGHZ01002561
[OGHZ] metagenome; Human gut stool
4222
4309
+
Ser
CGA
[ENA]
¢þ
>WENV181541037
OGIC01000795
[OGIC] metagenome; Human gut stool
1486
1573
+
Ser
CGA
[ENA]
¢þ
>WENV181550649
OGIN01000019
[OGIN] metagenome; Human gut stool
75349
75436
+
Ser
CGA
[ENA]
¢þ
>WENV181556803
OGIV01000358
[OGIV] metagenome; Human gut stool
28041
27954
-
Ser
CGA
[ENA]
¢þ
>WENV181558192
OGIX01000007
[OGIX] metagenome; Human gut stool
24366
24279
-
Ser
CGA
[ENA]
¢þ
>WENV181563353
OGJG01021335
[OGJG] metagenome; Human gut stool
265
352
+
Ser
CGA
[ENA]
¢þ
>WENV181570720
OGJO01000002
[OGJO] metagenome; Human gut stool
283484
283571
+
Ser
CGA
[ENA]
¢þ
>WENV181576305
OGJV01001838
[OGJV] metagenome; Human gut stool
274
187
-
Ser
CGA
[ENA]
¢þ
>WENV181587777
OGKH01000001
[OGKH] metagenome; Human gut stool
37028
37115
+
Ser
CGA
[ENA]
¢þ
>WENV181588625
OGKJ01000224
[OGKJ] metagenome; Human gut stool
17491
17578
+
Ser
CGA
[ENA]
¢þ
>WENV181589638
OGKM01000001
[OGKM] metagenome; Human gut stool
122837
122750
-
Ser
CGA
[ENA]
¢þ
>WENV181993553
OHAS01001543
[OHAS] human gut metagenome; faeces
926
1013
+
Ser
CGA
[ENA]
¢þ
>W141256137
CBVR010000006
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
4556
4643
+
Ser
CGA
[ENA]
¡û
>WENV183179873
OLPH01023148
[OLPH] human gut metagenome; faeces
221
134
-
Ser
CGA
[ENA]
¢þ
>WENV183217962
OLQI01005031
[OLQI] human gut metagenome; faeces
149
62
-
Ser
CGA
[ENA]
¢þ
>WENV183407046
OMAC01000009
[OMAC] human gut metagenome; feces
106076
105989
-
Ser
CGA
[ENA]
¢þ
>WENV183427385
OMBN01000002
[OMBN] human gut metagenome; feces
106076
105989
-
Ser
CGA
[ENA]
¢þ
>WENV183428464
OMBO01000007
[OMBO] human gut metagenome; feces
83825
83738
-
Ser
CGA
[ENA]
¢þ
>WENV183472637
OMER01000003
[OMER] human gut metagenome; feces
12450
12363
-
Ser
CGA
[ENA]
¢þ
>WENV183493743
OMGJ01002488
[OMGJ] human gut metagenome; human gut
2534
2447
-
Ser
CGA
[ENA]
¢þ
>WENV183605705
OODN01000001
[OODN] human gut metagenome; human gut
118292
118205
-
Ser
CGA
[ENA]
¢þ
>WENV183789022
PPYF01373118
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2235
2148
-
Ser
CGA
[ENA]
¢þ
>C181182040
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1820251
1820338
+
Ser
CGA
-
¡û
>W1910874528
NDYW01000016
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
46584
46671
+
Ser
CGA
[ENA]
¡û
>W1911569795
PCZA01000026
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
450
363
-
Ser
CGA
[ENA]
¡û
>W1911570175
PCZH01000005
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
31271
31184
-
Ser
CGA
[ENA]
¡û
>W1810070451
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
927965
927878
-
Ser
CGA
[ENA]
¡û
>W1810584336
QFAS01000005
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
186311
186398
+
Ser
CGA
[ENA]
¡û
>W1810797335
QRMK01000002
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
76063
76150
+
Ser
CGA
[ENA]
¡û
>W1810829779
QSLH01000001
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
283432
283519
+
Ser
CGA
[ENA]
¡û
>W1810838149
QSTB01000001
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
211039
211126
+
Ser
CGA
[ENA]
¡û
>C151030938
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
817514
817601
+
Ser
CGA
[Ensembl]
¡û
>C151082317
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
779394
779481
+
Ser
CGA
[Ensembl]
¡û
>W10124267
AEBA01000073
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
5826
5739
-
Ser
CGA
[ENA]
¡û
>C10109079
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
826651
826564
-
Ser
CGA
[Ensembl]
¡û
>W1511441055
JUQA01000051
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
6027
6114
+
Ser
CGA
[ENA]
¡û
>W1511443804
JUTI01000015
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
119280
119193
-
Ser
CGA
[ENA]
¡û
>W11131154
AEBA01000073
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
5826
5739
-
Ser
CGA
[ENA]
¡û
>W121045143
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
947857
947944
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK