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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.206949 (14 seq.)
>WENV016512
AACY020464965
Marine microbial communities from Global Ocean Sampling (GOS)
1796
1874
+
Asp
GTC
[ENA]
>WENV180099864
OANK01000939
[OANK] marine metagenome; ENVO:00002010
625
701
+
Asp
GTC
[ENA]
¢þ
>WENV180114310
OAPS01003842
[OAPS] marine metagenome; sea water
395
319
-
Asp
GTC
[ENA]
¢þ
>WENV180209260
OBAK01051320
[OBAK] marine metagenome; ENVO.00002150
243
167
-
Asp
GTC
[ENA]
¢þ
>WENV180361742
OBNW01000228
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
3608
3532
-
Asp
GTC
[ENA]
¢þ
>WENV180364963
OBOB01000793
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
199
123
-
Asp
GTC
[ENA]
¢þ
>WENV180585323
OCOL01000939
[OCOL] marine metagenome; ENVO:00002010
625
701
+
Asp
GTC
[ENA]
¢þ
>WENV180586769
OCON01001666
[OCON] marine metagenome; seawater
2342
2266
-
Asp
GTC
[ENA]
¢þ
>WENV180590663
OCOU01000876
[OCOU] marine metagenome; Water
312
236
-
Asp
GTC
[ENA]
¢þ
>WENV180635238
OCRD01001511
[OCRD] marine metagenome; seawater
732
808
+
Asp
GTC
[ENA]
¢þ
>WENV180636013
OCRE01040002
[OCRE] marine metagenome; Seawater
83
159
+
Asp
GTC
[ENA]
¢þ
>WENV180641313
OCRN01000032
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
17027
16951
-
Asp
GTC
[ENA]
¢þ
>WENV183807079
PVBE011169178
[PVBE] marine metagenome; water
232
308
+
Asp
GTC
[ENA]
¢þ
>WENV170521269
CEWF01145835
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
213
137
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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