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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207714 (18 seq.)
>A171001111
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
467720
467793
+
Val
TAC
-
¡û
>A171003069
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3323888
3323814
-
Val
TAC
-
¡û
>A171003172
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
3679976
3679902
-
Val
TAC
-
¡û
>A171003466
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
285325
285398
+
Val
TAC
-
¡û
>A171006941
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
621390
621317
-
Val
TAC
-
¡û
>A171006976
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2443545
2443472
-
Val
TAC
-
¡û
>WENV170680237
LFCJ01006518
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
73
-1
-
Val
TAC
[ENA]
¢þ
>W1910229939
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
915004
914930
-
Val
TAC
[ENA]
¡û
>W1910569086
JHUT02000014
Euryarchaeota
Natrinema mahii H13 [JHUT]
19454
19528
+
Val
TAC
[ENA]
¡û
>W1911434004
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1880277
1880203
-
Val
TAC
[ENA]
¡û
>W1911709964
QPND01000002
Euryarchaeota
Saliphagus sp. LR7 [QPND]
102322
102395
+
Val
TAC
[ENA]
¡û
>W1610004124
AGIN01000003
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
15666
15740
+
Val
TAC
[ENA]
¡û
>W1610005374
AJVG01000008
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
148394
148318
-
Val
TAC
[ENA]
¡û
>W1610011947
AOHX01000028
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
11264
11340
+
Val
TAC
[ENA]
¡û
>W1610012037
AOHZ01000043
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
49845
49772
-
Val
TAC
[ENA]
¡û
>W1610012434
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
109858
109785
-
Val
TAC
[ENA]
¡û
>W1610012752
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
136020
136093
+
Val
TAC
[ENA]
¡û
>W1610014418
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
28470
28397
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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