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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207735 (31 seq.)
>W1711129684
LUUG01000046
Gammaproteobacteria
Methylomonas methanica [LUUG]
66959
66883
-
Val
GAC
[ENA]
¡û
>W1711129740
LUUH01000050
Gammaproteobacteria
Methylomonas methanica [LUUH]
36550
36626
+
Val
GAC
[ENA]
¡û
>W131155765
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
986479
986403
-
Val
GAC
[ENA]
¡û
>W131171440
ARGF01000046
Gammaproteobacteria
Arhodomonas aquaeolei DSM 8974 [ARGF]
41053
40977
-
Val
GAC
[ENA]
¡û
>C000611
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
887833
887757
-
Val
GAC
[Ensembl]
¡û
>C010507
CP000544
Gammaproteobacteria
Halorhodospira halophila SL1 [CP000544]
494451
494527
+
Val
GAC
[Ensembl]
¡û
>w014126
AAOF01000001
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
481352
481428
+
Val
GAC
[ENA]
¡û
>WENV180318960
OBKM01076062
[OBKM] metagenome; water
137
61
-
Val
GAC
[ENA]
¢þ
>WENV180343254
OBLK01000594
[OBLK] soil metagenome; Clay
1835
1911
+
Val
GAC
[ENA]
¢þ
>WENV181404157
OGBZ01001966
[OGBZ] sediment metagenome; hot spring sediment
811
735
-
Val
GAC
[ENA]
¢þ
>C08000384
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
887833
887760
-
Val
GAC
[Ensembl]
¡û
>WENV183621262
OOFT01032923
[OOFT] marine metagenome; sea ice
352
276
-
Val
GAC
[ENA]
¢þ
>WENV183630654
OOGU01000113
[OOGU] marine metagenome; sea ice
14471
14547
+
Val
GAC
[ENA]
¢þ
>WENV183724580
PJQE01031126
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
784
708
-
Val
GAC
[ENA]
¢þ
>WENV170577686
FSSH01000527
[FSSH] freshwater metagenome; drinking water
63849
63773
-
Val
GAC
[ENA]
¢þ
>WENV170577913
FSSH01002603
[FSSH] freshwater metagenome; drinking water
1404
1328
-
Val
GAC
[ENA]
¢þ
>WENV170652589
JRYH01007604
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
8980
8904
-
Val
GAC
[ENA]
¢þ
>WENV170680470
LFCJ01012123
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1584
1508
-
Val
GAC
[ENA]
¢þ
>WENV170682561
LFIK01000345
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
34315
34239
-
Val
GAC
[ENA]
¢þ
>WENV170703714
LKMJ01015932
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2309
2233
-
Val
GAC
[ENA]
¢þ
>W09104159
AALK01000004
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [AALK]
85176
85100
-
Val
GAC
[ENA]
¡û
>W09105217
AAOQ01000003
Gammaproteobacteria
Halorhodospira halophila SL1 [AAOQ]
112427
112503
+
Val
GAC
[ENA]
¡û
>C181001660
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
2293145
2293221
+
Val
GAC
-
¡û
>W1810579280
QEQK01000002
Gammaproteobacteria
Abyssibacter profundi OUC007 [QEQK]
25187
25263
+
Val
GAC
[ENA]
¡û
>W1810586412
QFFI01000050
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
16784
16708
-
Val
GAC
[ENA]
¡û
>W1810665805
QJOD01000002
Gammaproteobacteria
Salinisphaera halophila KSM-18 [QJOD]
958337
958413
+
Val
GAC
[ENA]
¡û
>C131016220
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
719632
719708
+
Val
GAC
[Ensembl]
¡û
>W1610940757
LUUG01000046
Gammaproteobacteria
Methylomonas methanica [LUUG]
66959
66883
-
Val
GAC
[ENA]
¡û
>W1610940813
LUUH01000050
Gammaproteobacteria
Methylomonas methanica [LUUH]
36550
36626
+
Val
GAC
[ENA]
¡û
>WENV077617
AAFX01073102
Soil microbial communities from Minnesota Farm
173
249
+
Val
GAC
[ENA]
>W1710549086
FOEG01000003
Gammaproteobacteria
Aquisalimonas asiatica [FOEG]
64164
64088
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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