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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207885 (11 seq.)
>WENV180099758
NSIT01000059
[NSIT] invertebrate metagenome; Endozoicomonas-like sequences binned from scallop gill tissue
17336
17412
+
Val
GAC
[ENA]
¢þ
>C181049080
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
962342
962418
+
Val
GAC
-
¡û
>C181049945
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
947855
947931
+
Val
GAC
-
¡û
>C181049982
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
980758
980834
+
Val
GAC
-
¡û
>C181050019
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
948401
948477
+
Val
GAC
-
¡û
>C181050101
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
956090
956166
+
Val
GAC
-
¡û
>C191208068
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
950421
950497
+
Val
GAC
-
¡û
>W1810701976
QMFX01000004
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
79860
79784
-
Val
GAC
[ENA]
¡û
>W1511350719
JRMO01000014
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
177528
177604
+
Val
GAC
[ENA]
¡û
>C11122620
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1600585
1600661
+
Val
GAC
[Ensembl]
¡û
>C121009931
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
980743
980819
+
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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