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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207942 (20 seq.)
>C017884
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
778231
778307
+
Ile
GAT
[Ensembl]
¡û
>C017911
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2819051
2818975
-
Ile
GAT
[Ensembl]
¡û
>C017913
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2813126
2813050
-
Ile
GAT
[Ensembl]
¡û
>C017915
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2807233
2807157
-
Ile
GAT
[Ensembl]
¡û
>C017917
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2664391
2664315
-
Ile
GAT
[Ensembl]
¡û
>WENV180003739
FLRO01012632
[FLRO] metagenome; saliva
54
130
+
Ile
GAT
[ENA]
¢þ
>WENV180004989
FLRT01040526
[FLRT] metagenome; saliva
103
27
-
Ile
GAT
[ENA]
¢þ
>WENV180006880
FLRZ01009740
[FLRZ] metagenome; saliva
1859
1935
+
Ile
GAT
[ENA]
¢þ
>WENV181114909
OEEO01009370
[OEEO] human metagenome; G_DNA_Supragingival plaque
296
372
+
Ile
GAT
[ENA]
¢þ
>C181185196
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
782673
782749
+
Ile
GAT
-
¡û
>C181185223
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2653048
2652972
-
Ile
GAT
-
¡û
>C181185225
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2500126
2500050
-
Ile
GAT
-
¡û
>W09105549
AAPX01000001
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
141829
141905
+
Ile
GAT
[ENA]
¡û
>W1910372467
FUGD01000016
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
3622
3546
-
Ile
GAT
[ENA]
¡û
>W1910372510
FUGE01000027
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
1834
1910
+
Ile
GAT
[ENA]
¡û
>W1911397559
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
1991238
1991314
+
Ile
GAT
[ENA]
¡û
>W1911397561
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2168032
2168108
+
Ile
GAT
[ENA]
¡û
>W1911397591
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
1139166
1139090
-
Ile
GAT
[ENA]
¡û
>W1911397593
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
958965
958889
-
Ile
GAT
[ENA]
¡û
>W11163501
AFHU01000211
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
3625
3549
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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