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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207974 (14 seq.)
>W1711385062
MEDR01000037
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
27890
27814
-
Pro
GGG
[ENA]
¡û
>W131235289
AULL01000013
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
219553
219629
+
Pro
GGG
[ENA]
¡û
>W1711503248
MKTK01000035
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
14371
14447
+
Pro
GGG
[ENA]
¡û
>W1712082030
NHOS01000003
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
239289
239365
+
Pro
GGG
[ENA]
¡û
>C181225831
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
17163
17089
-
Pro
GGG
-
¡û
>C191025431
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
959526
959452
-
Pro
GGG
-
¡û
>C191120426
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
2326706
2326780
+
Pro
GGG
-
¡û
>C191120897
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1550207
1550281
+
Pro
GGG
-
¡û
>C191120952
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1248427
1248353
-
Pro
GGG
-
¡û
>W1910933667
NIUY01000002
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
803321
803395
+
Pro
GGG
[ENA]
¡û
>SRA1005770
SRR014587.80614
Metagenomic analysis of viruses in reclaimed water (SRP000673)
119
195
+
Pro
GGG
[SRA]
>W1810758160
QPIE01000004
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
293431
293357
-
Pro
GGG
[ENA]
¡û
>W1511685287
LFNG01000001
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
27790
27716
-
Pro
GGG
[ENA]
¡û
>W1710574128
FOYA01000010
Bacteroidota
Flavobacterium akiainvivens [FOYA]
58187
58113
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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