This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208296 (56 seq.)
>W1711319098
MAZB01000166
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
3945
3869
-
Arg
ACG
[ENA]
¡û
>W1711777266
MVLA01000005
Gammaproteobacteria
Escherichia coli [MVLA]
61526
61450
-
Arg
ACG
[ENA]
¡û
>W1711822183
MXNB01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw [MXNB]
84749
84673
-
Arg
ACG
[ENA]
¡û
>W131251444
CAVM010000090
Gammaproteobacteria
Xenorhabdus nematophila F1 [CAVM]
19773
19697
-
Arg
ACG
[ENA]
¡û
>W141043128
AMFN01000014
Gammaproteobacteria
Enterobacteriaceae bacterium LSJC7 [AMFN]
281122
281198
+
Arg
ACG
[ENA]
¡û
>WENV181228884
OFEI01000079
[OFEI] insect metagenome; insect
9168
9244
+
Arg
ACG
[ENA]
¢þ
>WENV181232049
OFEL01000643
[OFEL] insect metagenome; insect
491
567
+
Arg
ACG
[ENA]
¢þ
>W141188103
AYMN01000023
Gammaproteobacteria
Serratia sp. H1n [AYMN]
17398
17322
-
Arg
ACG
[ENA]
¡û
>W141188347
AYMQ01000070
Gammaproteobacteria
Serratia sp. H1w [AYMQ]
8110
8186
+
Arg
ACG
[ENA]
¡û
>WENV182395158
OIEK01002359
[OIEK] human gut metagenome; human gut
114
190
+
Arg
ACG
[ENA]
¢þ
>WENV182819642
OKAF01000121
[OKAF] human gut metagenome; human gut
9254
9178
-
Arg
ACG
[ENA]
¢þ
>C191219946
LR217735
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCisplendens [LR217735]
910631
910555
-
Arg
ACG
-
¡û
>C191219981
LR217737
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipiceae [LR217737]
948095
948019
-
Arg
ACG
-
¡û
>W1910617967
LJAM02000700
Gammaproteobacteria
Candidatus Erwinia dacicola dacicola Oroville [LJAM]
322
398
+
Arg
ACG
[ENA]
¡û
>W1910797270
MSTL01000016
Gammaproteobacteria
Serratia sp. OLAL2 [MSTL]
22593
22517
-
Arg
ACG
[ENA]
¡û
>W1910797271
MSTL01000016
Gammaproteobacteria
Serratia sp. OLAL2 [MSTL]
22455
22379
-
Arg
ACG
[ENA]
¡û
>W1910797272
MSTL01000016
Gammaproteobacteria
Serratia sp. OLAL2 [MSTL]
22324
22248
-
Arg
ACG
[ENA]
¡û
>W1910939987
NJAK01000001
Gammaproteobacteria
Xenorhabdus ishibashii DSM 22670 [NJAK]
2772247
2772323
+
Arg
ACG
[ENA]
¡û
>W1911174469
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
2982204
2982128
-
Arg
ACG
[ENA]
¡û
>W1911174470
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
2981880
2981804
-
Arg
ACG
[ENA]
¡û
>W1911174471
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
2981750
2981674
-
Arg
ACG
[ENA]
¡û
>W1911175339
NQJZ01000066
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
142233
142309
+
Arg
ACG
[ENA]
¡û
>W1911175340
NQJZ01000066
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
142557
142633
+
Arg
ACG
[ENA]
¡û
>W1911175341
NQJZ01000066
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
142687
142763
+
Arg
ACG
[ENA]
¡û
>W1911178966
NQMP01000026
Gammaproteobacteria
Serratia fonticola BWK15 [NQMP]
11048
11124
+
Arg
ACG
[ENA]
¡û
>W1911178967
NQMP01000026
Gammaproteobacteria
Serratia fonticola BWK15 [NQMP]
11186
11262
+
Arg
ACG
[ENA]
¡û
>W1911178968
NQMP01000026
Gammaproteobacteria
Serratia fonticola BWK15 [NQMP]
11315
11391
+
Arg
ACG
[ENA]
¡û
>W1810147267
PIQI01000027
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
525059
525135
+
Arg
ACG
[ENA]
¡û
>W1810147268
PIQI01000027
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
525221
525297
+
Arg
ACG
[ENA]
¡û
>W1810147269
PIQI01000027
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
525356
525432
+
Arg
ACG
[ENA]
¡û
>W1810147270
PIQI01000027
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
525493
525569
+
Arg
ACG
[ENA]
¡û
>W1810423647
PYTY01000022
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
101196
101272
+
Arg
ACG
[ENA]
¡û
>W1810423648
PYTY01000022
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
101335
101411
+
Arg
ACG
[ENA]
¡û
>W1810423671
PYTY01000047
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
2
78
+
Arg
ACG
[ENA]
¡û
>W1810546237
QDLY01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 227 [QDLY]
408611
408687
+
Arg
ACG
[ENA]
¡û
>W1810546634
QDMD01000003
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 222 [QDMD]
317460
317536
+
Arg
ACG
[ENA]
¡û
>W1810548032
QDMV01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 204 [QDMV]
408605
408681
+
Arg
ACG
[ENA]
¡û
>W1810549278
QDNL01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 188 [QDNL]
55493
55417
-
Arg
ACG
[ENA]
¡û
>W1810549991
QDNU01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 179 [QDNU]
317427
317503
+
Arg
ACG
[ENA]
¡û
>W1810553491
QDPN01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 131 [QDPN]
137389
137313
-
Arg
ACG
[ENA]
¡û
>W1810554213
QDPW01000001
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Rubislaw 122 [QDPW]
236719
236795
+
Arg
ACG
[ENA]
¡û
>W1810676985
QKMJ01000016
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
53582
53658
+
Arg
ACG
[ENA]
¡û
>W1810676986
QKMJ01000016
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
53744
53820
+
Arg
ACG
[ENA]
¡û
>W1810676987
QKMJ01000016
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
53876
53952
+
Arg
ACG
[ENA]
¡û
>W1810676988
QKMJ01000016
Gammaproteobacteria
Pantoea sp. AG1095 [QKMJ]
53997
54073
+
Arg
ACG
[ENA]
¡û
>W1810785338
QRBM01000014
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
54581
54657
+
Arg
ACG
[ENA]
¡û
>W1810785339
QRBM01000014
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
54721
54797
+
Arg
ACG
[ENA]
¡û
>C151103913
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
1130906
1130982
+
Arg
ACG
[Ensembl]
¡û
>C151103914
LN681227
Gammaproteobacteria
Xenorhabdus nematophila AN6/1 [LN681227]
1131070
1131146
+
Arg
ACG
[Ensembl]
¡û
>W1510059537
CCWM01000446
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
108
184
+
Arg
ACG
[ENA]
¡û
>W1510059545
CCWM01000466
Gammaproteobacteria
Xenorhabdus nematophila str. Anatoliense [CCWM]
108
184
+
Arg
ACG
[ENA]
¡û
>C10105562
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
2875209
2875133
-
Arg
ACG
[Ensembl]
¡û
>C10114280
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
1130958
1131034
+
Arg
ACG
[Ensembl]
¡û
>C10114281
FN667742
Gammaproteobacteria
Xenorhabdus nematophila ATCC 19061 [FN667742]
1131122
1131198
+
Arg
ACG
[Ensembl]
¡û
>W1511638075
LDNM01000055
Gammaproteobacteria
Xenorhabdus griffiniae BMMCB [LDNM]
37041
37117
+
Arg
ACG
[ENA]
¡û
>W1611062371
MAZB01000166
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
3945
3869
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK