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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208397 (7 seq.)
>W1711350405
MCRJ01000289
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
573
497
-
Ile
GAT
[ENA]
¡û
>WENV183749943
PPFU01236455
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1129
1053
-
Ile
GAT
[ENA]
¢þ
>C181227380
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
4477467
4477391
-
Ile
GAT
-
¡û
>C181227384
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
3283757
3283681
-
Ile
GAT
-
¡û
>C191000394
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
3801994
3802070
+
Ile
GAT
-
¡û
>C191000410
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
2761928
2761852
-
Ile
GAT
-
¡û
>C191000414
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
2187511
2187435
-
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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