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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208517 (112 seq.)
>W1711934403
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
25021
24945
-
Arg
ACG
[ENA]
¡û
>WENV013005
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
7003
6925
-
Arg
ACG
[ENA]
>WENV013007
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
7282
7206
-
Arg
ACG
[ENA]
>C022228
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1332856
1332932
+
Arg
ACG
[Ensembl]
¡û
>C022230
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1333135
1333211
+
Arg
ACG
[Ensembl]
¡û
>C022330
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1327666
1327742
+
Arg
ACG
[Ensembl]
¡û
>C022332
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1327945
1328021
+
Arg
ACG
[Ensembl]
¡û
>C022426
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1404074
1404150
+
Arg
ACG
[Ensembl]
¡û
>C022428
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1404353
1404429
+
Arg
ACG
[Ensembl]
¡û
>C022529
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445483
1445559
+
Arg
ACG
[Ensembl]
¡û
>C022531
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445766
1445842
+
Arg
ACG
[Ensembl]
¡û
>C022534
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1446188
1446264
+
Arg
ACG
[Ensembl]
¡û
>w022861
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
6950
6872
-
Arg
ACG
[ENA]
¡û
>w022856
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7654
7581
-
Arg
ACG
[ENA]
¡û
>WENV180311514
OBJT01348523
[OBJT] soil metagenome; soil
176
100
-
Arg
ACG
[ENA]
¢þ
>W141227791
BALL01000032
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
56620
56696
+
Arg
ACG
[ENA]
¡û
>W141227921
BALN01000028
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
310
386
+
Arg
ACG
[ENA]
¡û
>W141227976
BALO01000040
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
40363
40439
+
Arg
ACG
[ENA]
¡û
>C181057561
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4898507
4898583
+
Arg
ACG
-
¡û
>C181057563
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4898786
4898862
+
Arg
ACG
-
¡û
>C181062996
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3436450
3436374
-
Arg
ACG
-
¡û
>C181062998
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3436170
3436094
-
Arg
ACG
-
¡û
>C181165418
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883438
3883514
+
Arg
ACG
-
¡û
>C181165420
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883721
3883797
+
Arg
ACG
-
¡û
>C181165423
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3884143
3884219
+
Arg
ACG
-
¡û
>W141520102
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
54231
54155
-
Arg
ACG
[ENA]
¡û
>W141520104
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53952
53876
-
Arg
ACG
[ENA]
¡û
>C191107848
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3600847
3600771
-
Arg
ACG
-
¡û
>C191107850
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3600633
3600557
-
Arg
ACG
-
¡û
>C191107851
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3600513
3600437
-
Arg
ACG
-
¡û
>C191107852
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3600406
3600330
-
Arg
ACG
-
¡û
>W09104027
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
115888
115964
+
Arg
ACG
[ENA]
¡û
>W09104029
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
116167
116243
+
Arg
ACG
[ENA]
¡û
>W09104268
AALN01000007
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
22180
22104
-
Arg
ACG
[ENA]
¡û
>W09104270
AALN01000007
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
21897
21821
-
Arg
ACG
[ENA]
¡û
>W09104273
AALN01000007
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
21475
21399
-
Arg
ACG
[ENA]
¡û
>W09104611
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20886
20810
-
Arg
ACG
[ENA]
¡û
>W09104613
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20607
20531
-
Arg
ACG
[ENA]
¡û
>W1910645106
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
66570
66646
+
Arg
ACG
[ENA]
¡û
>W1910645108
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
66784
66860
+
Arg
ACG
[ENA]
¡û
>W1910645109
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
66904
66980
+
Arg
ACG
[ENA]
¡û
>W1910645202
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
92957
92881
-
Arg
ACG
[ENA]
¡û
>W1910645204
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
92743
92667
-
Arg
ACG
[ENA]
¡û
>W1910645205
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
92623
92547
-
Arg
ACG
[ENA]
¡û
>W1910645206
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
92516
92440
-
Arg
ACG
[ENA]
¡û
>W1910645304
LVDU01000016
Gammaproteobacteria
Shewanella algae YHL [LVDU]
1145
1069
-
Arg
ACG
[ENA]
¡û
>W1910645306
LVDU01000016
Gammaproteobacteria
Shewanella algae YHL [LVDU]
931
855
-
Arg
ACG
[ENA]
¡û
>W1910645307
LVDU01000016
Gammaproteobacteria
Shewanella algae YHL [LVDU]
811
735
-
Arg
ACG
[ENA]
¡û
>W1910645308
LVDU01000016
Gammaproteobacteria
Shewanella algae YHL [LVDU]
704
628
-
Arg
ACG
[ENA]
¡û
>W1910905499
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25716
25640
-
Arg
ACG
[ENA]
¡û
>W1910905500
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25608
25532
-
Arg
ACG
[ENA]
¡û
>W1910905501
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25500
25424
-
Arg
ACG
[ENA]
¡û
>W1910905502
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25394
25318
-
Arg
ACG
[ENA]
¡û
>W1910905503
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25275
25199
-
Arg
ACG
[ENA]
¡û
>W1910905504
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25168
25092
-
Arg
ACG
[ENA]
¡û
>W1910905506
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
24945
24869
-
Arg
ACG
[ENA]
¡û
>W1910905508
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
24722
24646
-
Arg
ACG
[ENA]
¡û
>W1910905512
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
24276
24200
-
Arg
ACG
[ENA]
¡û
>W1910913796
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
7310
7234
-
Arg
ACG
[ENA]
¡û
>W1910913798
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
7032
6956
-
Arg
ACG
[ENA]
¡û
>W1910927087
NIJK01000039
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
4
80
+
Arg
ACG
[ENA]
¡û
>W1910927089
NIJK01000039
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
227
303
+
Arg
ACG
[ENA]
¡û
>W1910927213
NIJL01000040
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
83285
83209
-
Arg
ACG
[ENA]
¡û
>W1910927215
NIJL01000040
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
83071
82995
-
Arg
ACG
[ENA]
¡û
>W1910927216
NIJL01000040
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
82951
82875
-
Arg
ACG
[ENA]
¡û
>W1910927217
NIJL01000040
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
82844
82768
-
Arg
ACG
[ENA]
¡û
>W1910927256
NIJM01000039
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
11446
11522
+
Arg
ACG
[ENA]
¡û
>W1810073442
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
156189
156113
-
Arg
ACG
[ENA]
¡û
>W1810585869
QFDC01000017
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
30984
31060
+
Arg
ACG
[ENA]
¡û
>W1810585871
QFDC01000017
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
31198
31274
+
Arg
ACG
[ENA]
¡û
>W1810585872
QFDC01000017
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
31318
31394
+
Arg
ACG
[ENA]
¡û
>W1810585873
QFDC01000017
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
31425
31501
+
Arg
ACG
[ENA]
¡û
>W1810587754
QFLG01000029
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
72641
72717
+
Arg
ACG
[ENA]
¡û
>W1810671694
QJSY01000032
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
29520
29444
-
Arg
ACG
[ENA]
¡û
>W1810671696
QJSY01000032
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
29306
29230
-
Arg
ACG
[ENA]
¡û
>W1810671697
QJSY01000032
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
29186
29110
-
Arg
ACG
[ENA]
¡û
>W1810671698
QJSY01000032
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
29080
29004
-
Arg
ACG
[ENA]
¡û
>W1810786553
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
467182
467106
-
Arg
ACG
[ENA]
¡û
>W1810786559
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
466571
466495
-
Arg
ACG
[ENA]
¡û
>WENV003394
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
24614
24690
+
Arg
ACG
[ENA]
>WENV003396
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
24892
24970
+
Arg
ACG
[ENA]
>W1510077697
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
938167
938091
-
Arg
ACG
[ENA]
¡û
>W1510077701
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
937649
937573
-
Arg
ACG
[ENA]
¡û
>W1510077702
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
937529
937453
-
Arg
ACG
[ENA]
¡û
>W1510077703
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
937422
937346
-
Arg
ACG
[ENA]
¡û
>W1511306524
JPMA01000012
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
41
117
+
Arg
ACG
[ENA]
¡û
>W1511306536
JPMA01000015
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
202
126
-
Arg
ACG
[ENA]
¡û
>W1511306537
JPMA01000015
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
94
18
-
Arg
ACG
[ENA]
¡û
>W1511403495
JTLE01000033
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
204
280
+
Arg
ACG
[ENA]
¡û
>W1511403497
JTLE01000033
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
483
559
+
Arg
ACG
[ENA]
¡û
>C11121562
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3251150
3251074
-
Arg
ACG
[Ensembl]
¡û
>C11121567
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3250445
3250369
-
Arg
ACG
[Ensembl]
¡û
>W1511477941
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
64667
64591
-
Arg
ACG
[ENA]
¡û
>W1511477942
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
64548
64472
-
Arg
ACG
[ENA]
¡û
>W1511477943
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
64441
64365
-
Arg
ACG
[ENA]
¡û
>W1511477947
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
64032
63956
-
Arg
ACG
[ENA]
¡û
>W1511477949
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
63809
63733
-
Arg
ACG
[ENA]
¡û
>W1511477951
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
63586
63510
-
Arg
ACG
[ENA]
¡û
>W1511477953
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
63363
63287
-
Arg
ACG
[ENA]
¡û
>W11169924
AFOZ01000035
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
33255
33179
-
Arg
ACG
[ENA]
¡û
>W11169926
AFOZ01000036
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
192
116
-
Arg
ACG
[ENA]
¡û
>W11169927
AFOZ01000036
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
85
9
-
Arg
ACG
[ENA]
¡û
>W1610042102
BAXN01000020
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
4
80
+
Arg
ACG
[ENA]
¡û
>W1610042103
BAXN01000020
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
111
187
+
Arg
ACG
[ENA]
¡û
>W1610042119
BAXN01000036
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
78
2
-
Arg
ACG
[ENA]
¡û
>W1610617911
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6407
6331
-
Arg
ACG
[ENA]
¡û
>W1610617913
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6128
6052
-
Arg
ACG
[ENA]
¡û
>W1710039196
BAXN01000020
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
4
80
+
Arg
ACG
[ENA]
¡û
>W1710039197
BAXN01000020
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
111
187
+
Arg
ACG
[ENA]
¡û
>W1710039213
BAXN01000036
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
78
2
-
Arg
ACG
[ENA]
¡û
>W1710744086
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6407
6331
-
Arg
ACG
[ENA]
¡û
>W1710744088
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6128
6052
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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