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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208821 (13 seq.)
>W1711168307
LVXY01000005
Betaproteobacteria
Cupriavidus gilardii [LVXY]
406283
406207
-
Arg
TCT
[ENA]
¡û
>W131043717
AMPR01000365
Betaproteobacteria
Cupriavidus sp. HPC(L) [AMPR]
1433
1357
-
Arg
TCT
[ENA]
¡û
>WENV180029732
FTJL01002358
[FTJL] metagenome; soil
2209
2133
-
Arg
TCT
[ENA]
¢þ
>C08001888
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
3683557
3683484
-
Arg
TCT
[Ensembl]
¡û
>WENV170965378
MTEU01001602
[MTEU] soil metagenome; naturally attenuated soil
9356
9432
+
Arg
TCT
[ENA]
¢þ
>WENV170965910
MTEV01009421
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
895
819
-
Arg
TCT
[ENA]
¢þ
>WENV170966194
MTEX01003767
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
158
82
-
Arg
TCT
[ENA]
¢þ
>C181034359
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3145235
3145159
-
Arg
TCT
-
¡û
>W1910890718
NEVL01000004
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
630466
630390
-
Arg
TCT
[ENA]
¡û
>C151070022
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
2121969
2121893
-
Arg
TCT
-
¡û
>C161094198
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
1501404
1501480
+
Arg
TCT
[Ensembl]
¡û
>C161109113
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
113550
113474
-
Arg
TCT
[Ensembl]
¡û
>W1610978222
LVXY01000005
Betaproteobacteria
Cupriavidus gilardii [LVXY]
406283
406207
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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