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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208907 (45 seq.)
>W1711270532
LZEJ01000001
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
44588
44512
-
Arg
ACG
[ENA]
¡û
>W1711270533
LZEJ01000001
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
44469
44393
-
Arg
ACG
[ENA]
¡û
>W1711486053
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
2927971
2927895
-
Arg
ACG
[ENA]
¡û
>W1712106974
NIWW01000009
Gammaproteobacteria
Lacimicrobium sp. SS2-24 [NIWW]
139857
139781
-
Arg
ACG
[ENA]
¡û
>W1712106979
NIWW01000010
Gammaproteobacteria
Lacimicrobium sp. SS2-24 [NIWW]
42725
42649
-
Arg
ACG
[ENA]
¡û
>WENV181414208
OGCL01000109
[OGCL] hot springs metagenome; Hot spring water
206
130
-
Arg
ACG
[ENA]
¢þ
>WENV181414209
OGCL01000109
[OGCL] hot springs metagenome; Hot spring water
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV181414292
OGCL01000180
[OGCL] hot springs metagenome; Hot spring water
194
118
-
Arg
ACG
[ENA]
¢þ
>WENV181414293
OGCL01000180
[OGCL] hot springs metagenome; Hot spring water
75
1
-
Arg
ACG
[ENA]
¢þ
>WENV181414797
OGCL01001434
[OGCL] hot springs metagenome; Hot spring water
20422
20346
-
Arg
ACG
[ENA]
¢þ
>WENV181837227
OGVK01010056
[OGVK] freshwater metagenome; freshwater
1081
1157
+
Arg
ACG
[ENA]
¢þ
>WENV181837228
OGVK01010056
[OGVK] freshwater metagenome; freshwater
1231
1307
+
Arg
ACG
[ENA]
¢þ
>WENV181841402
OGVR01023068
[OGVR] freshwater metagenome; freshwater
163
87
-
Arg
ACG
[ENA]
¢þ
>WENV181844205
OGVV01020867
[OGVV] freshwater metagenome; freshwater
524
600
+
Arg
ACG
[ENA]
¢þ
>WENV170457955
CEVB01012832
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
318
242
-
Arg
ACG
[ENA]
¢þ
>WENV170457956
CEVB01012832
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
179
103
-
Arg
ACG
[ENA]
¢þ
>WENV170965061
MTET01001413
[MTET] soil metagenome; garden soil control
144795
144719
-
Arg
ACG
[ENA]
¢þ
>WENV170965062
MTET01001413
[MTET] soil metagenome; garden soil control
144676
144600
-
Arg
ACG
[ENA]
¢þ
>WENV170966568
MTEX01013856
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
124
48
-
Arg
ACG
[ENA]
¢þ
>W141779383
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
23217
23141
-
Arg
ACG
[ENA]
¡û
>W141779384
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
23076
23000
-
Arg
ACG
[ENA]
¡û
>W1911597939
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
120686
120610
-
Arg
ACG
[ENA]
¡û
>W1911597940
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
120547
120471
-
Arg
ACG
[ENA]
¡û
>W1511584677
LAVS01000001
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
173586
173510
-
Arg
ACG
[ENA]
¡û
>W1511584678
LAVS01000001
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
173471
173395
-
Arg
ACG
[ENA]
¡û
>C161058105
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
1338345
1338421
+
Arg
ACG
[Ensembl]
¡û
>C161058131
CP013650
Gammaproteobacteria
Lacimicrobium alkaliphilum YelD216 [CP013650]
3002683
3002607
-
Arg
ACG
[Ensembl]
¡û
>C161058493
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2339212
2339288
+
Arg
ACG
-
¡û
>C161058494
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2339353
2339429
+
Arg
ACG
-
¡û
>C161058519
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4380067
4379991
-
Arg
ACG
-
¡û
>C161058520
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4379926
4379850
-
Arg
ACG
-
¡û
>W121040566
AHTH01000045
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
122735
122811
+
Arg
ACG
[ENA]
¡û
>W121040567
AHTH01000045
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
122854
122930
+
Arg
ACG
[ENA]
¡û
>W121087043
AKKU01000012
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
138197
138121
-
Arg
ACG
[ENA]
¡û
>W121087044
AKKU01000012
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
138078
138002
-
Arg
ACG
[ENA]
¡û
>W121104108
ALAB01000005
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
268475
268551
+
Arg
ACG
[ENA]
¡û
>W121104109
ALAB01000005
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
268594
268670
+
Arg
ACG
[ENA]
¡û
>W121124698
BAFK01000013
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
73002
72926
-
Arg
ACG
[ENA]
¡û
>W121124699
BAFK01000013
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
72868
72792
-
Arg
ACG
[ENA]
¡û
>W1610585466
LCWL01000101
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
564
488
-
Arg
ACG
[ENA]
¡û
>W1610585467
LCWL01000101
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
445
369
-
Arg
ACG
[ENA]
¡û
>W1710533922
FNRM01000006
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
49710
49634
-
Arg
ACG
[ENA]
¡û
>W1710533923
FNRM01000006
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
49597
49521
-
Arg
ACG
[ENA]
¡û
>W1710704657
LCWL01000101
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
564
488
-
Arg
ACG
[ENA]
¡û
>W1710704658
LCWL01000101
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
445
369
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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