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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209256 (21 seq.)
>WENV180252521
OBEQ010456570
[OBEQ] groundwater metagenome; groundwater
365
289
-
Ile
GAT
[ENA]
¢þ
>WENV180346760
OBLN01272924
[OBLN] sediment metagenome; sediment
85
161
+
Ile
GAT
[ENA]
¢þ
>WENV181188583
OEOE01208269
[OEOE] activated sludge metagenome; Activated Sludge
221
145
-
Ile
GAT
[ENA]
¢þ
>WENV181231740
OFEK01058355
[OFEK] activated sludge metagenome; Anaerobic digester
205
129
-
Ile
GAT
[ENA]
¢þ
>WENV183690814
ORMF011654533
[ORMF] groundwater metagenome; groundwater
154
230
+
Ile
GAT
[ENA]
¢þ
>WENV183703794
PDVJ01047632
[PDVJ] alkali sediment metagenome; glacial lake sediment
680
604
-
Ile
GAT
[ENA]
¢þ
>WENV183703812
PDVJ01050192
[PDVJ] alkali sediment metagenome; glacial lake sediment
457
381
-
Ile
GAT
[ENA]
¢þ
>WENV183703861
PDVJ01055805
[PDVJ] alkali sediment metagenome; glacial lake sediment
545
469
-
Ile
GAT
[ENA]
¢þ
>WENV183703928
PDVJ01070343
[PDVJ] alkali sediment metagenome; glacial lake sediment
183
107
-
Ile
GAT
[ENA]
¢þ
>WENV170005881
AMQJ01003171
[AMQJ] sediment metagenome; subsurface aquifer sediment
157
81
-
Ile
GAT
[ENA]
¢þ
>WENV170597901
FUWD010018281
[FUWD] metagenome; unknown
380
304
-
Ile
GAT
[ENA]
¢þ
>WENV170623910
FUWD013172662
[FUWD] metagenome; unknown
916
840
-
Ile
GAT
[ENA]
¢þ
>WENV170632200
FUWD013379340
[FUWD] metagenome; unknown
916
840
-
Ile
GAT
[ENA]
¢þ
>W1910744418
MIBO01000018
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_02_FULL_43_9 [MIBO]
2499
2423
-
Ile
GAT
[ENA]
¡û
>C11120663
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
658859
658935
+
Ile
GAT
[Ensembl]
¡û
>C11120673
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
2523051
2522975
-
Ile
GAT
[Ensembl]
¡û
>C11120683
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
1947960
1947884
-
Ile
GAT
[Ensembl]
¡û
>C161002979
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
643892
643968
+
Ile
GAT
-
¡û
>C161002984
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1055355
1055431
+
Ile
GAT
-
¡û
>C161002998
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
2310002
2309926
-
Ile
GAT
-
¡û
>C161003007
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1853198
1853122
-
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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