This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209311 (37 seq.)
>W1710878199
LMQT01000006
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
15651
15575
-
Arg
ACG
[ENA]
¡û
>W1710878325
LMQW01000001
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
370986
371062
+
Arg
ACG
[ENA]
¡û
>W1710878433
LMQY01000018
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
260296
260220
-
Arg
ACG
[ENA]
¡û
>W131186294
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
253525
253601
+
Arg
ACG
[ENA]
¡û
>W131218809
ATYA01000006
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
25800
25876
+
Arg
ACG
[ENA]
¡û
>C018875
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
712189
712113
-
Arg
ACG
[Ensembl]
¡û
>WENV180304719
OBJI01309783
[OBJI] soil metagenome; soil
108
32
-
Arg
ACG
[ENA]
¢þ
>WENV180308676
OBJR01111675
[OBJR] soil metagenome; soil
272
196
-
Arg
ACG
[ENA]
¢þ
>C08001593
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
4009812
4009739
-
Arg
ACG
[Ensembl]
¡û
>WENV183668666
ORJL010763541
[ORJL] groundwater metagenome; groundwater
173
249
+
Arg
ACG
[ENA]
¢þ
>WENV170002755
AGTN01119903
[AGTN] bioreactor metagenome; poplar biomass
561
485
-
Arg
ACG
[ENA]
¢þ
>WENV170004116
AGTN01565027
[AGTN] bioreactor metagenome; poplar biomass
197
273
+
Arg
ACG
[ENA]
¢þ
>WENV170554218
CXWK01054361
[CXWK] wastewater metagenome; activated sludge
1316
1392
+
Arg
ACG
[ENA]
¢þ
>C191028859
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
1571971
1572047
+
Arg
ACG
-
¡û
>C191220344
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
2661757
2661681
-
Arg
ACG
-
¡û
>C191221064
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
2149919
2149995
+
Arg
ACG
-
¡û
>W141730456
JNIJ01000007
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
141492
141416
-
Arg
ACG
[ENA]
¡û
>W09103896
AALA01000027
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
25619
25543
-
Arg
ACG
[ENA]
¡û
>W09104424
AALR01000010
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
76724
76648
-
Arg
ACG
[ENA]
¡û
>W141815709
JQJH01000007
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
29767
29843
+
Arg
ACG
[ENA]
¡û
>W141817297
JQKO01000011
Alphaproteobacteria
Methylocapsa aurea [JQKO]
11420
11344
-
Arg
ACG
[ENA]
¡û
>C09107911
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
3068321
3068245
-
Arg
ACG
[Ensembl]
¡û
>W1910913996
NHSJ01000045
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
70022
70098
+
Arg
ACG
[ENA]
¡û
>W1810068798
PDZR01000013
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
101093
101017
-
Arg
ACG
[ENA]
¡û
>SRA1014273
SRR023845.67666
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
210
134
-
Arg
ACG
[SRA]
>ENV09000536
ABSO01015063
Freshwater sediment metagenome lwFormate_C1
91
15
-
Arg
ACG
[ENA]
¡û
>W1511517263
JXXE01000303
Alphaproteobacteria
Rhodopseudomonas palustris BAL398 [JXXE]
8437
8361
-
Arg
ACG
[ENA]
¡û
>C161016829
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
7668589
7668513
-
Arg
ACG
[Ensembl]
¡û
>W1610056461
BBWH01000022
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
49788
49712
-
Arg
ACG
[ENA]
¡û
>W1610740545
LMQT01000006
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
15651
15575
-
Arg
ACG
[ENA]
¡û
>W1610740671
LMQW01000001
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
370986
371062
+
Arg
ACG
[ENA]
¡û
>W1610740779
LMQY01000018
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
260296
260220
-
Arg
ACG
[ENA]
¡û
>W1710053160
BBWH01000022
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
49788
49712
-
Arg
ACG
[ENA]
¡û
>W1710530081
FNOM01000004
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
74533
74609
+
Arg
ACG
[ENA]
¡û
>W1710536647
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
2955430
2955354
-
Arg
ACG
[ENA]
¡û
>W1710550401
FOFG01000006
Alphaproteobacteria
Faunimonas pinastri A52C2 [FOFG]
2344
2268
-
Arg
ACG
[ENA]
¡û
>W1710567154
FOSN01000001
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
408505
408581
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK