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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20934 (75 seq.)
>W1710809787
LKEV01000001
Actinomycetota
Corynebacterium lowii [LKEV]
224143
224233
+
Ser
CGA
[ENA]
¡û
>W1710821338
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
527477
527387
-
Ser
CGA
[ENA]
¡û
>W1711082149
LSTQ01000023
Actinomycetota
Corynebacterium stationis [LSTQ]
258187
258097
-
Ser
CGA
[ENA]
¡û
>W1711114819
LTZP01000117
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
386
296
-
Ser
CGA
[ENA]
¡û
>C171001813
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
245820
245910
+
Ser
CGA
-
¡û
>C171002119
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
245651
245741
+
Ser
CGA
-
¡û
>C171098496
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
332412
332502
+
Ser
CGA
-
¡û
>C171101825
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
90702
90792
+
Ser
CGA
-
¡û
>W131165351
ARBM01000004
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
169872
169962
+
Ser
CGA
[ENA]
¡û
>W131219762
ATYV01000003
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
4252
4342
+
Ser
CGA
[ENA]
¡û
>WENV180725813
ODGS01003064
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
1175
1265
+
Ser
CGA
[ENA]
¢þ
>WENV180726868
ODGU01000840
[ODGU] human metagenome; G_DNA_Supragingival plaque
17737
17647
-
Ser
CGA
[ENA]
¢þ
>WENV180735619
ODHB01000143
[ODHB] human metagenome; G_DNA_Supragingival plaque
4937
5027
+
Ser
CGA
[ENA]
¢þ
>WENV180738713
ODHD01000367
[ODHD] human metagenome; G_DNA_Supragingival plaque
6677
6767
+
Ser
CGA
[ENA]
¢þ
>WENV180750483
ODHS01002725
[ODHS] human metagenome; G_DNA_Supragingival plaque
3495
3405
-
Ser
CGA
[ENA]
¢þ
>WENV180754777
ODHU01000820
[ODHU] human metagenome; G_DNA_Supragingival plaque
3027
3117
+
Ser
CGA
[ENA]
¢þ
>WENV180764517
ODIB01000021
[ODIB] human metagenome; G_DNA_Supragingival plaque
9601
9691
+
Ser
CGA
[ENA]
¢þ
>WENV180778109
ODIM01000631
[ODIM] human metagenome; G_DNA_Supragingival plaque
9349
9439
+
Ser
CGA
[ENA]
¢þ
>WENV180796437
ODJB01004791
[ODJB] human metagenome; G_DNA_Supragingival plaque
2740
2830
+
Ser
CGA
[ENA]
¢þ
>WENV180800522
ODJD01000091
[ODJD] human metagenome; G_DNA_Supragingival plaque
9285
9195
-
Ser
CGA
[ENA]
¢þ
>WENV180803504
ODJE01205578
[ODJE] human metagenome; G_DNA_Tongue dorsum
100
10
-
Ser
CGA
[ENA]
¢þ
>WENV180822230
ODJT01000103
[ODJT] human metagenome; G_DNA_Supragingival plaque
15058
14968
-
Ser
CGA
[ENA]
¢þ
>WENV180842481
ODKM01033504
[ODKM] human metagenome; G_DNA_Buccal mucosa
477
567
+
Ser
CGA
[ENA]
¢þ
>WENV180881335
ODMA01000015
[ODMA] human metagenome; G_DNA_Supragingival plaque
22651
22741
+
Ser
CGA
[ENA]
¢þ
>WENV180921362
ODTJ01000030
[ODTJ] human metagenome; G_DNA_Supragingival plaque
166051
165961
-
Ser
CGA
[ENA]
¢þ
>WENV180923456
ODTK01000001
[ODTK] human metagenome; G_DNA_Supragingival plaque
573333
573243
-
Ser
CGA
[ENA]
¢þ
>WENV180927393
ODTM01000408
[ODTM] human metagenome; G_DNA_Supragingival plaque
4080
4170
+
Ser
CGA
[ENA]
¢þ
>WENV180938062
ODTX01000492
[ODTX] human metagenome; G_DNA_Supragingival plaque
26926
26836
-
Ser
CGA
[ENA]
¢þ
>WENV180944910
ODUC01047130
[ODUC] human metagenome; G_DNA_Supragingival plaque
14
104
+
Ser
CGA
[ENA]
¢þ
>WENV180963869
ODUO01000013
[ODUO] human metagenome; G_DNA_Supragingival plaque
31040
31130
+
Ser
CGA
[ENA]
¢þ
>WENV180973308
ODUW01003165
[ODUW] human metagenome; G_DNA_Supragingival plaque
3099
3009
-
Ser
CGA
[ENA]
¢þ
>WENV180975401
ODUY01005997
[ODUY] human metagenome; G_DNA_Supragingival plaque
1230
1140
-
Ser
CGA
[ENA]
¢þ
>WENV180987027
ODVK01003407
[ODVK] human metagenome; G_DNA_Supragingival plaque
2361
2451
+
Ser
CGA
[ENA]
¢þ
>WENV181018719
ODWU01000042
[ODWU] human metagenome; G_DNA_Supragingival plaque
53169
53079
-
Ser
CGA
[ENA]
¢þ
>WENV181029164
ODXF01000003
[ODXF] human metagenome; G_DNA_Supragingival plaque
94270
94360
+
Ser
CGA
[ENA]
¢þ
>WENV181066600
ODZI01000404
[ODZI] human metagenome; G_DNA_Supragingival plaque
2361
2451
+
Ser
CGA
[ENA]
¢þ
>WENV181080068
OEAS01025160
[OEAS] human metagenome; G_DNA_Supragingival plaque
429
339
-
Ser
CGA
[ENA]
¢þ
>WENV181090154
OEBC01000006
[OEBC] human metagenome; G_DNA_Supragingival plaque
220586
220496
-
Ser
CGA
[ENA]
¢þ
>WENV181106596
OEEI01000005
[OEEI] human metagenome; G_DNA_Supragingival plaque
4042
4132
+
Ser
CGA
[ENA]
¢þ
>WENV181120073
OEFJ01003939
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
1201
1111
-
Ser
CGA
[ENA]
¢þ
>WENV181121223
OEFL01001472
[OEFL] human metagenome; G_DNA_Supragingival plaque
4834
4744
-
Ser
CGA
[ENA]
¢þ
>WENV181137468
OEGJ01004508
[OEGJ] human metagenome; G_DNA_Supragingival plaque
4133
4223
+
Ser
CGA
[ENA]
¢þ
>WENV181145842
OEHQ01000150
[OEHQ] human metagenome; G_DNA_Supragingival plaque
108
18
-
Ser
CGA
[ENA]
¢þ
>WENV181156882
OEIE01180413
[OEIE] human metagenome; G_DNA_Supragingival plaque
3
93
+
Ser
CGA
[ENA]
¢þ
>WENV181158611
OEIH01004198
[OEIH] human metagenome; G_DNA_Supragingival plaque
1821
1911
+
Ser
CGA
[ENA]
¢þ
>WENV181177088
OEJS01000004
[OEJS] human metagenome; G_DNA_Supragingival plaque
31040
31130
+
Ser
CGA
[ENA]
¢þ
>WENV181178903
OEJT01000542
[OEJT] human metagenome; G_DNA_Supragingival plaque
15136
15046
-
Ser
CGA
[ENA]
¢þ
>WENV183508088
OMHB01000235
[OMHB] human oral metagenome; human oral
4120
4210
+
Ser
CGA
[ENA]
¢þ
>WENV183508303
OMHC01001640
[OMHC] human oral metagenome; human oral
835
925
+
Ser
CGA
[ENA]
¢þ
>WENV183508737
OMHF01001454
[OMHF] human oral metagenome; human oral
127
37
-
Ser
CGA
[ENA]
¢þ
>WENV183509005
OMHG01001644
[OMHG] human oral metagenome; human oral
1347
1437
+
Ser
CGA
[ENA]
¢þ
>WENV183509850
OMHK01000384
[OMHK] human oral metagenome; human oral
1858
1948
+
Ser
CGA
[ENA]
¢þ
>WENV183510543
OMHP01000006
[OMHP] human oral metagenome; human oral
10022
9932
-
Ser
CGA
[ENA]
¢þ
>WENV183511395
OMJG01000175
[OMJG] food metagenome; Cotija cheese
46779
46689
-
Ser
CGA
[ENA]
¢þ
>WENV170688949
LFRM01269401
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2890
2980
+
Ser
CGA
[ENA]
¢þ
>WENV170723029
LSQX01252460
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
91
1
-
Ser
CGA
[ENA]
¢þ
>C191094610
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
1902256
1902166
-
Ser
CGA
-
¡û
>C191213048
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
1096854
1096764
-
Ser
CGA
-
¡û
>W09134372
ACSH01000015
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
142166
142076
-
Ser
CGA
[ENA]
¡û
>W1910442364
FWFE01000031
Actinomycetota
Corynebacterium casei JB4 [FWFE]
14647
14557
-
Ser
CGA
[ENA]
¡û
>W1911498449
OCTS01000004
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
191871
191781
-
Ser
CGA
[ENA]
¡û
>W1911630693
PTJO01000006
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
223358
223448
+
Ser
CGA
[ENA]
¡û
>W1810326697
PUGE01000001
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
708035
707945
-
Ser
CGA
[ENA]
¡û
>C151005918
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
309724
309814
+
Ser
CGA
[Ensembl]
¡û
>W10116349
ADNS01000003
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
14093
14183
+
Ser
CGA
[ENA]
¡û
>W1511351369
JRNE01000058
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
118153
118063
-
Ser
CGA
[ENA]
¡û
>W11121018
ADNS01000003
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
14093
14183
+
Ser
CGA
[ENA]
¡û
>W1511585621
LAYS01000021
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
18576
18666
+
Ser
CGA
[ENA]
¡û
>C161070407
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
268026
268116
+
Ser
CGA
[Ensembl]
¡û
>W1610068206
BCRD01000004
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
69024
69114
+
Ser
CGA
[ENA]
¡û
>W121127385
CAFW01000016
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
14987
14897
-
Ser
CGA
[ENA]
¡û
>W1610673842
LKEV01000001
Actinomycetota
Corynebacterium lowii [LKEV]
224143
224233
+
Ser
CGA
[ENA]
¡û
>W1610685300
LKST01000002
Actinomycetota
Corynebacterium oculi [LKST]
527477
527387
-
Ser
CGA
[ENA]
¡û
>W1610920934
LSTQ01000023
Actinomycetota
Corynebacterium stationis [LSTQ]
258187
258097
-
Ser
CGA
[ENA]
¡û
>W1710065579
BCRD01000004
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
69024
69114
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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