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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20941 (24 seq.)
>W1711005279
LQNM01000005
Bacillota
Pediococcus pentosaceus [LQNM]
277
364
+
Ser
CGA
[ENA]
¡û
>W1711068937
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
99837
99924
+
Ser
CGA
[ENA]
¡û
>C171119495
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
706856
706769
-
Ser
CGA
-
¡û
>C171126512
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
696362
696275
-
Ser
CGA
-
¡û
>C017427
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1127365
1127452
+
Ser
CGA
[Ensembl]
¡û
>WENV180333986
OBLF01003523
[OBLF] metagenome; feces
2500
2413
-
Ser
CGA
[ENA]
¢þ
>W141241957
CAHU01000005
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
40947
41034
+
Ser
CGA
[ENA]
¡û
>WENV183790345
PPYF01411229
[PPYF] human gut metagenome; stool from patient with Crohn's disease
41025
41112
+
Ser
CGA
[ENA]
¢þ
>W141402957
JDVW01000007
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
41260
41347
+
Ser
CGA
[ENA]
¡û
>WENV170659126
JXWR01000293
[JXWR] soil metagenome; rice field; ambient CO2
40940
41027
+
Ser
CGA
[ENA]
¢þ
>C181042760
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
377695
377782
+
Ser
CGA
-
¡û
>C191023238
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1047999
1048086
+
Ser
CGA
-
¡û
>W09101459
AAEV01000004
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
15012
14925
-
Ser
CGA
[ENA]
¡û
>C141009498
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1091224
1091311
+
Ser
CGA
[Ensembl]
¡û
>W1911631283
PUFB01000013
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
11163
11076
-
Ser
CGA
[ENA]
¡û
>W1810000829
BEWQ01000003
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
34205
34118
-
Ser
CGA
[ENA]
¡û
>C161092360
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
944457
944370
-
Ser
CGA
[Ensembl]
¡û
>W1610057787
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
415728
415815
+
Ser
CGA
[ENA]
¡û
>W1610528417
JQBF01000005
Bacillota
Pediococcus pentosaceus [JQBF]
40977
41064
+
Ser
CGA
[ENA]
¡û
>W1610650088
LJIU01000004
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
291891
291978
+
Ser
CGA
[ENA]
¡û
>W1610855929
LQNM01000005
Bacillota
Pediococcus pentosaceus [LQNM]
277
364
+
Ser
CGA
[ENA]
¡û
>W1610909507
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
99837
99924
+
Ser
CGA
[ENA]
¡û
>W1710054486
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
415728
415815
+
Ser
CGA
[ENA]
¡û
>W1710630007
JQBF01000005
Bacillota
Pediococcus pentosaceus [JQBF]
40977
41064
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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