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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209456 (37 seq.)
>A171001594
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1761080
1761007
-
Lys
TTT
-
¡û
>A171002732
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
207563
207489
-
Lys
TTT
-
¡û
>A171003166
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2536833
2536907
+
Lys
TTT
-
¡û
>A171003480
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2398654
2398728
+
Lys
TTT
-
¡û
>A171006967
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2662864
2662938
+
Lys
TTT
-
¡û
>WENV170681163
LFFM01000143
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
42213
42286
+
Lys
TTT
[ENA]
¢þ
>WENV170681484
LFFM01001077
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13795
13722
-
Lys
TTT
[ENA]
¢þ
>WENV170681768
LFFM01002577
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4201
4127
-
Lys
TTT
[ENA]
¢þ
>WENV170681833
LFFM01003335
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7921
7994
+
Lys
TTT
[ENA]
¢þ
>WENV170702246
LKMJ01001030
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11635
11708
+
Lys
TTT
[ENA]
¢þ
>WENV170702565
LKMJ01002546
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1046
972
-
Lys
TTT
[ENA]
¢þ
>WENV170703016
LKMJ01005558
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4199
4125
-
Lys
TTT
[ENA]
¢þ
>WENV170703576
LKMJ01013929
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1547
1620
+
Lys
TTT
[ENA]
¢þ
>WENV170703694
LKMJ01015656
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
225
151
-
Lys
TTT
[ENA]
¢þ
>WENV170703775
LKMJ01016564
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2049
1976
-
Lys
TTT
[ENA]
¢þ
>WENV170704090
LKMJ01022391
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1688
1614
-
Lys
TTT
[ENA]
¢þ
>W1910226933
FNFE01000007
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
292318
292391
+
Lys
TTT
[ENA]
¡û
>W1910340547
FTNR01000006
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
249438
249512
+
Lys
TTT
[ENA]
¡û
>W1910657558
MASN01000024
Euryarchaeota
Natrialba sp. SSL1 [MASN]
3205
3132
-
Lys
TTT
[ENA]
¡û
>W1910826099
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
1225517
1225591
+
Lys
TTT
[ENA]
¡û
>W1911709995
QPND01000018
Euryarchaeota
Saliphagus sp. LR7 [QPND]
69979
70053
+
Lys
TTT
[ENA]
¡û
>W1610004082
AGIM01000003
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
43899
43825
-
Lys
TTT
[ENA]
¡û
>W1610005387
AJVG01000024
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
33891
33965
+
Lys
TTT
[ENA]
¡û
>W1610011864
AOHV01000034
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
3205
3278
+
Lys
TTT
[ENA]
¡û
>W1610011958
AOHX01000037
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
719
645
-
Lys
TTT
[ENA]
¡û
>W1610012049
AOHZ01000059
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
4960
4886
-
Lys
TTT
[ENA]
¡û
>W1610012161
AOIC01000046
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
64488
64562
+
Lys
TTT
[ENA]
¡û
>W1610012446
AOIL01000055
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
4547
4473
-
Lys
TTT
[ENA]
¡û
>W1610012507
AOIN01000040
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
3338
3265
-
Lys
TTT
[ENA]
¡û
>W1610012643
AOIQ01000016
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
25101
25028
-
Lys
TTT
[ENA]
¡û
>W1610012773
AOIT01000024
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
851
777
-
Lys
TTT
[ENA]
¡û
>W1610029934
AXZD01000008
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
340761
340688
-
Lys
TTT
[ENA]
¡û
>W1610046866
BBCV01000062
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
21716
21790
+
Lys
TTT
[ENA]
¡û
>W1610682129
LKMK01000026
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
1598
1524
-
Lys
TTT
[ENA]
¡û
>W1610682611
LKNF01000001
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
42213
42286
+
Lys
TTT
[ENA]
¡û
>W1610682652
LKNG01000025
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
13795
13722
-
Lys
TTT
[ENA]
¡û
>W1610925058
LTAZ01000005
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
88115
88042
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK