This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209542 (52 seq.)
>W1710867330
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
331415
331491
+
Pro
CGG
[ENA]
¡û
>W1711221741
LXRI01000467
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
141
217
+
Pro
CGG
[ENA]
¡û
>W1711394825
MERS01000016
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
33379
33455
+
Pro
CGG
[ENA]
¡û
>W1711394859
MERT01000019
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
176924
176848
-
Pro
CGG
[ENA]
¡û
>W1711751705
MUNZ01000059
Betaproteobacteria
Hydrogenophaga sp. A37 [MUNZ]
11577
11501
-
Pro
CGG
[ENA]
¡û
>C171049780
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
3215482
3215558
+
Pro
CGG
-
¡û
>C171094218
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
283130
283206
+
Pro
CGG
-
¡û
>C017286
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
796908
796984
+
Pro
CGG
[Ensembl]
¡û
>WENV180032460
FTJZ01322335
[FTJZ] metagenome; soil
116
40
-
Pro
CGG
[ENA]
¢þ
>WENV180267271
OBEQ011835485
[OBEQ] groundwater metagenome; groundwater
309
385
+
Pro
CGG
[ENA]
¢þ
>WENV180659731
OCVV010879939
[OCVV] gut metagenome; gut
824
748
-
Pro
CGG
[ENA]
¢þ
>WENV180659732
OCVV010879939
[OCVV] gut metagenome; gut
824
748
-
Pro
CGG
[ENA]
¢þ
>WENV180829487
ODKA01195356
[ODKA] human metagenome; G_DNA_Stool
184
260
+
Pro
CGG
[ENA]
¢þ
>WENV181883277
OGXI01003244
[OGXI] human gut metagenome; faeces
9863
9787
-
Pro
CGG
[ENA]
¢þ
>WENV181929166
OGYO01012451
[OGYO] human gut metagenome; faeces
1837
1913
+
Pro
CGG
[ENA]
¢þ
>W141214272
AZSO01000007
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
2074
2150
+
Pro
CGG
[ENA]
¡û
>WENV182632264
OJKW01057390
[OJKW] metagenome; faeces
386
462
+
Pro
CGG
[ENA]
¢þ
>WENV183331033
OLWB01045049
[OLWB] human gut metagenome; faeces
209
285
+
Pro
CGG
[ENA]
¢þ
>WENV170554436
CXWK01069504
[CXWK] wastewater metagenome; activated sludge
532
456
-
Pro
CGG
[ENA]
¢þ
>WENV170639740
JFJP01006515
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6748
6824
+
Pro
CGG
[ENA]
¢þ
>WENV170648384
JRHI01000261
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
37948
37872
-
Pro
CGG
[ENA]
¢þ
>C181158563
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
835017
835093
+
Pro
CGG
-
¡û
>W09104850
AANM01000001
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
98039
98115
+
Pro
CGG
[ENA]
¡û
>W141565121
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3236142
3236066
-
Pro
CGG
[ENA]
¡û
>W09119264
ACDQ01000014
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
17920
17844
-
Pro
CGG
[ENA]
¡û
>W1910699824
MERX01000137
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_66_10 [MERX]
7612
7688
+
Pro
CGG
[ENA]
¡û
>W1910699881
MERZ01000180
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
12833
12757
-
Pro
CGG
[ENA]
¡û
>W1910700133
MESF01000172
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_66_35 [MESF]
33775
33851
+
Pro
CGG
[ENA]
¡û
>W1911072287
NMRM01000053
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDO [NMRM]
8371
8295
-
Pro
CGG
[ENA]
¡û
>W1810573117
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
12782
12706
-
Pro
CGG
[ENA]
¡û
>W1810884780
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
357037
356961
-
Pro
CGG
[ENA]
¡û
>W1511596010
LBNQ01000021
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
1408
1484
+
Pro
CGG
[ENA]
¡û
>W11187578
CAFB01000040
Betaproteobacteria
Candidatus Glomeribacter gigasporarum gigasporarum BEG34 [CAFB]
23015
22939
-
Pro
CGG
[ENA]
¡û
>C161107906
LN906597
Betaproteobacteria
Candidatus Ichthyocystis hellenicum [LN906597]
771365
771289
-
Pro
CGG
-
¡û
>W1610459395
FKIH01000007
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIH]
10976
10900
-
Pro
CGG
[ENA]
¡û
>W1610459424
FKII01000046
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKII]
39692
39616
-
Pro
CGG
[ENA]
¡û
>W1610459465
FKIJ01000007
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIJ]
41085
41161
+
Pro
CGG
[ENA]
¡û
>W1610459496
FKIK01000005
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIK]
45830
45906
+
Pro
CGG
[ENA]
¡û
>W1610459553
FKIL01000101
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIL]
12557
12481
-
Pro
CGG
[ENA]
¡û
>W1610459573
FKIM01000011
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIM]
31297
31373
+
Pro
CGG
[ENA]
¡û
>W1610507003
FLSL01000220
Betaproteobacteria
Candidatus Ichthyocystis hellenicum 2013Arg42i [FLSL]
5843
5919
+
Pro
CGG
[ENA]
¡û
>W1610729676
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
331415
331491
+
Pro
CGG
[ENA]
¡û
>W1611006210
LXRI01000467
Betaproteobacteria
Candidatus Glomeribacter gigasporarum [LXRI]
141
217
+
Pro
CGG
[ENA]
¡û
>W1710067945
BCTJ01000007
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
33627
33703
+
Pro
CGG
[ENA]
¡û
>W1710459023
FKIH01000007
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIH]
10976
10900
-
Pro
CGG
[ENA]
¡û
>W1710459052
FKII01000046
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKII]
39692
39616
-
Pro
CGG
[ENA]
¡û
>W1710459093
FKIJ01000007
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIJ]
41085
41161
+
Pro
CGG
[ENA]
¡û
>W1710459124
FKIK01000005
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIK]
45830
45906
+
Pro
CGG
[ENA]
¡û
>W1710459181
FKIL01000101
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIL]
12557
12481
-
Pro
CGG
[ENA]
¡û
>W1710459201
FKIM01000011
Betaproteobacteria
Candidatus Ichthyocystis sparus 2013Ark19i [FKIM]
31297
31373
+
Pro
CGG
[ENA]
¡û
>W1710499166
FLSL01000024
Betaproteobacteria
Candidatus Ichthyocystis hellenicum 2013Arg42i [FLSL]
16833
16909
+
Pro
CGG
[ENA]
¡û
>W1710499221
FLSL01000220
Betaproteobacteria
Candidatus Ichthyocystis hellenicum 2013Arg42i [FLSL]
5843
5919
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK