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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20959 (18 seq.)
>W1711183455
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
63649
63561
-
Ser
TGA
[ENA]
¡û
>W1711627032
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
3727998
3728088
+
Ser
TGA
[ENA]
¡û
>C171109489
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2802518
2802608
+
Ser
TGA
-
¡û
>W141755576
JNWQ01000060
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
47051
46963
-
Ser
TGA
[ENA]
¡û
>W141755600
JNWR01000001
Actinomycetota
Kitasatospora aureofaciens [JNWR]
234681
234771
+
Ser
TGA
[ENA]
¡û
>W141759698
JNZN01001695
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
5498
5410
-
Ser
TGA
[ENA]
¡û
>W141761749
JOAY01000006
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
81007
81095
+
Ser
TGA
[ENA]
¡û
>W141763678
JOCF01000010
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
27309
27397
+
Ser
TGA
[ENA]
¡û
>W141767515
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
103406
103316
-
Ser
TGA
[ENA]
¡û
>W141768731
JOFK01000009
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
191600
191690
+
Ser
TGA
[ENA]
¡û
>W141770066
JOGG01000001
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
279440
279530
+
Ser
TGA
[ENA]
¡û
>W141771649
JOHH01003453
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
1321
1409
+
Ser
TGA
[ENA]
¡û
>W141772009
JOHO01000004
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
73674
73584
-
Ser
TGA
[ENA]
¡û
>W1911494801
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
3802029
3802117
+
Ser
TGA
[ENA]
¡û
>W1511311665
JPRF01000423
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
1026
1116
+
Ser
TGA
[ENA]
¡û
>W1511545188
JZKG01000045
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
35978
36068
+
Ser
TGA
[ENA]
¡û
>W1511545227
JZKH01000005
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
11968
11878
-
Ser
TGA
[ENA]
¡û
>W1511590446
LBHA01000127
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
1129
1039
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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