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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209809 (50 seq.)
>W1710797055
LJSR01000004
Alphaproteobacteria
Rhizobium acidisoli [LJSR]
339723
339647
-
Arg
CCT
[ENA]
¡û
>W1710866859
LMHV01000001
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
31669
31593
-
Arg
CCT
[ENA]
¡û
>W1711081109
LSRO01000145
Alphaproteobacteria
Rhizobium sp. 58 [LSRO]
2072
1996
-
Arg
CCT
[ENA]
¡û
>W1711081153
LSRP01000142
Alphaproteobacteria
Pararhizobium antarcticum 59 [LSRP]
2072
1996
-
Arg
CCT
[ENA]
¡û
>W1711213727
LXKO01000041
Alphaproteobacteria
Rhizobium sp. AC44/96 [LXKO]
46396
46472
+
Arg
CCT
[ENA]
¡û
>W1711253214
LYPM01000024
Alphaproteobacteria
Rhizobium aegyptiacum [LYPM]
12301
12225
-
Arg
CCT
[ENA]
¡û
>W1711489087
MKIM01000031
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
358737
358661
-
Arg
CCT
[ENA]
¡û
>C171114949
CP020947
Alphaproteobacteria
Rhizobium sp. CIAT894 [CP020947]
4080504
4080580
+
Arg
CCT
-
¡û
>W141004133
AEYE02000029
Alphaproteobacteria
Rhizobium grahamii CCGE 502 [AEYE]
118148
118224
+
Arg
CCT
[ENA]
¡û
>WENV180285439
OBID01424828
[OBID] metagenome; sludge
211
135
-
Arg
CCT
[ENA]
¢þ
>W08007902
ABKO01000008
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2304 [ABKO]
20182
20258
+
Arg
CCT
[ENA]
¡û
>W08010602
ABRD01002385
Alphaproteobacteria
Rhizobium etli CIAT 894 [ABRD] CIAT 894 [ABRD]
1462
1389
-
Arg
CCT
[ENA]
¡û
>WENV170705157
LLEP01012633
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
216
292
+
Arg
CCT
[ENA]
¢þ
>WENV170705253
LLEQ01001391
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1139
1063
-
Arg
CCT
[ENA]
¢þ
>C191133539
CP034998
Alphaproteobacteria
Rhizobium acidisoli FH23 [CP034998]
3798716
3798792
+
Arg
CCT
-
¡û
>C191185593
CP041025
Alphaproteobacteria
Paremcibacter congregatus ZYLT [CP041025]
3093382
3093458
+
Arg
CCT
-
¡û
>W141712212
JMQK01000003
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
62121
62197
+
Arg
CCT
[ENA]
¡û
>W141776091
JOKI01000007
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
143503
143427
-
Arg
CCT
[ENA]
¡û
>W141776134
JOKJ01000004
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
143503
143427
-
Arg
CCT
[ENA]
¡û
>W141816211
JQJS01000006
Alphaproteobacteria
Rhizobium leguminosarum [JQJS]
308506
308582
+
Arg
CCT
[ENA]
¡û
>W141819131
JQMB01000006
Alphaproteobacteria
Rhizobium alamii [JQMB]
87384
87460
+
Arg
CCT
[ENA]
¡û
>C09108881
CP001191
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2304 [CP001191]
3734133
3734209
+
Arg
CCT
[Ensembl]
¡û
>W1910636626
LODW01000082
Alphaproteobacteria
Rhizobium hidalgonense FH14 [LODW]
288665
288589
-
Arg
CCT
[ENA]
¡û
>W1910636690
LOID01000002
Alphaproteobacteria
Rhizobium sp. N4311 [LOID]
85696
85772
+
Arg
CCT
[ENA]
¡û
>W1910840702
NAAC01000017
Alphaproteobacteria
Rhizobium grahamii CCGM3 [NAAC]
120651
120727
+
Arg
CCT
[ENA]
¡û
>W1910841964
NAON01000024
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CCGM4 [NAON]
65602
65678
+
Arg
CCT
[ENA]
¡û
>W1910842011
NAOO01000027
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CCGM5 [NAOO]
41151
41227
+
Arg
CCT
[ENA]
¡û
>W1910842060
NAOP01000013
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CCGM6 [NAOP]
93877
93953
+
Arg
CCT
[ENA]
¡û
>W1911409194
NWSQ01000005
Alphaproteobacteria
Rhizobium sp. L43 [NWSQ]
418827
418751
-
Arg
CCT
[ENA]
¡û
>W1911409263
NWSR01000031
Alphaproteobacteria
Rhizobium sp. L18 [NWSR]
15356
15280
-
Arg
CCT
[ENA]
¡û
>W1911409358
NWSV01000001
Alphaproteobacteria
Rhizobium chutanense C5 [NWSV]
85125
85201
+
Arg
CCT
[ENA]
¡û
>W1911409491
NWSY01000004
Alphaproteobacteria
Rhizobium hidalgonense FH14 [NWSY]
288665
288589
-
Arg
CCT
[ENA]
¡û
>W1810053709
PDEM01000033
Alphaproteobacteria
Paremcibacter congregatus ZYL [PDEM]
108216
108140
-
Arg
CCT
[ENA]
¡û
>W1810665686
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
1021574
1021498
-
Arg
CCT
[ENA]
¡û
>C151016889
CP007067
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CB782 [CP007067]
3605208
3605284
+
Arg
CCT
[Ensembl]
¡û
>W1511434050
JUHR01000012
Alphaproteobacteria
Rhizobium alamii YR584 [JUHR]
87389
87465
+
Arg
CCT
[ENA]
¡û
>W1511681338
LFIO01000691
Alphaproteobacteria
Rhizobium ecuadorense CNPSO 671 [LFIO]
15086
15010
-
Arg
CCT
[ENA]
¡û
>C161057975
CP013630
Alphaproteobacteria
Rhizobium sp. N324 [CP013630]
4286333
4286409
+
Arg
CCT
-
¡û
>C161058024
CP013636
Alphaproteobacteria
Rhizobium sp. N541 [CP013636]
4209798
4209874
+
Arg
CCT
-
¡û
>W121002981
AEYF01000040
Alphaproteobacteria
Rhizobium sp. CCGE 510 [AEYF]
210967
210891
-
Arg
CCT
[ENA]
¡û
>W121068267
AJUJ01000021
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2012 [AJUJ]
95912
95988
+
Arg
CCT
[ENA]
¡û
>W121068338
AJUK01000026
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM2297 [AJUK]
85482
85558
+
Arg
CCT
[ENA]
¡û
>W121070080
AJWE01000103
Alphaproteobacteria
Rhizobium sp. CF142 [AJWE]
22427
22503
+
Arg
CCT
[ENA]
¡û
>W121084293
AKHZ01000017
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WSM597 [AKHZ]
150030
149954
-
Arg
CCT
[ENA]
¡û
>W1610514676
FMAJ01000010
Alphaproteobacteria
Rhizobium aethiopicum HBR26 [FMAJ]
201780
201704
-
Arg
CCT
[ENA]
¡û
>W1610661012
LJSR01000004
Alphaproteobacteria
Rhizobium acidisoli [LJSR]
339723
339647
-
Arg
CCT
[ENA]
¡û
>W1610729205
LMHV01000001
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
31669
31593
-
Arg
CCT
[ENA]
¡û
>W1611000731
LXKO01000041
Alphaproteobacteria
Rhizobium sp. AC44/96 [LXKO]
46396
46472
+
Arg
CCT
[ENA]
¡û
>W1611017751
LYPM01000024
Alphaproteobacteria
Rhizobium aegyptiacum [LYPM]
12301
12225
-
Arg
CCT
[ENA]
¡û
>W1710500366
FMAJ01000010
Alphaproteobacteria
Rhizobium aethiopicum HBR26 [FMAJ]
201780
201704
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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