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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210127 (70 seq.)
>W131167045
ARCY01000030
Betaproteobacteria
Paraburkholderia tuberum WSM4176 [ARCY]
410702
410778
+
Arg
ACG
[ENA]
¡û
>W1711689307
MSDV01000042
Betaproteobacteria
Burkholderia sp. SRS-W-2-2016 [MSDV]
102872
102948
+
Arg
ACG
[ENA]
¡û
>W1711744328
MUHU01000002
Betaproteobacteria
Derxia lacustris [MUHU]
521857
521933
+
Arg
ACG
[ENA]
¡û
>W1712050060
NFVC01000097
Betaproteobacteria
Paraburkholderia hospita terrae [NFVC]
25350
25274
-
Arg
ACG
[ENA]
¡û
>WENV180016762
FSVW01001175
[FSVW] metagenome; soil
3454
3378
-
Arg
ACG
[ENA]
¢þ
>WENV180016774
FSVW01001838
[FSVW] metagenome; soil
3162
3238
+
Arg
ACG
[ENA]
¢þ
>WENV180016829
FSVW01003750
[FSVW] metagenome; soil
6119
6195
+
Arg
ACG
[ENA]
¢þ
>WENV180029691
FTJL01000643
[FTJL] metagenome; soil
1834
1758
-
Arg
ACG
[ENA]
¢þ
>WENV180029765
FTJL01004185
[FTJL] metagenome; soil
2756
2832
+
Arg
ACG
[ENA]
¢þ
>WENV180029927
FTJL01022999
[FTJL] metagenome; soil
797
721
-
Arg
ACG
[ENA]
¢þ
>WENV180316339
OBKI01015714
[OBKI] human gut metagenome; human gut
461
385
-
Arg
ACG
[ENA]
¢þ
>WENV180316340
OBKI01015714
[OBKI] human gut metagenome; human gut
356
280
-
Arg
ACG
[ENA]
¢þ
>WENV180316355
OBKI01016060
[OBKI] human gut metagenome; human gut
429
353
-
Arg
ACG
[ENA]
¢þ
>WENV181461170
OGEM01000794
[OGEM] metagenome; Human gut stool
9037
9113
+
Arg
ACG
[ENA]
¢þ
>WENV181461171
OGEM01000794
[OGEM] metagenome; Human gut stool
9142
9218
+
Arg
ACG
[ENA]
¢þ
>WENV181473346
OGFB01001479
[OGFB] metagenome; Human gut stool
2968
2892
-
Arg
ACG
[ENA]
¢þ
>WENV181473457
OGFB01005788
[OGFB] metagenome; Human gut stool
665
741
+
Arg
ACG
[ENA]
¢þ
>WENV181539823
OGIA01000556
[OGIA] metagenome; Human gut stool
25101
25025
-
Arg
ACG
[ENA]
¢þ
>WENV181549936
OGIL01020428
[OGIL] metagenome; Human gut stool
1300
1376
+
Arg
ACG
[ENA]
¢þ
>WENV181571656
OGJP01000350
[OGJP] metagenome; Human gut stool
11848
11924
+
Arg
ACG
[ENA]
¢þ
>WENV181571658
OGJP01000350
[OGJP] metagenome; Human gut stool
24391
24467
+
Arg
ACG
[ENA]
¢þ
>WENV181591064
OGKO01005383
[OGKO] metagenome; Human gut stool
3653
3577
-
Arg
ACG
[ENA]
¢þ
>WENV181605300
OGLJ01003752
[OGLJ] metagenome; Human gut stool
4406
4482
+
Arg
ACG
[ENA]
¢þ
>W141169890
AXWS01000012
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
180043
179967
-
Arg
ACG
[ENA]
¡û
>W141237501
BBJI01000005
Betaproteobacteria
Paraburkholderia kururiensis subsp. thiooxydans NBRC 107107 [BBJI]
287278
287354
+
Arg
ACG
[ENA]
¡û
>W141237625
BBJK01000085
Betaproteobacteria
Paraburkholderia terrae NBRC 100964 [BBJK]
41221
41297
+
Arg
ACG
[ENA]
¡û
>WENV182464468
OIOI01001976
[OIOI] human gut metagenome; human gut
337
413
+
Arg
ACG
[ENA]
¢þ
>W141267645
CCNS01000018
Betaproteobacteria
Caballeronia glathei [CCNS]
143852
143928
+
Arg
ACG
[ENA]
¡û
>WENV182719032
OJPM01005055
[OJPM] human gut metagenome; stool sample
99
175
+
Arg
ACG
[ENA]
¢þ
>WENV182981208
OKYU01025706
[OKYU] human gut metagenome; human gut
459
535
+
Arg
ACG
[ENA]
¢þ
>WENV183526868
ONZV01012209
[ONZV] human gut metagenome; human gut
130
54
-
Arg
ACG
[ENA]
¢þ
>WENV183567947
OOCB01001480
[OOCB] human gut metagenome; human gut
9822
9898
+
Arg
ACG
[ENA]
¢þ
>WENV183567949
OOCB01001480
[OOCB] human gut metagenome; human gut
22355
22431
+
Arg
ACG
[ENA]
¢þ
>WENV183584898
OOCR01000260
[OOCR] human gut metagenome; human gut
3067
2991
-
Arg
ACG
[ENA]
¢þ
>WENV183585081
OOCR01000915
[OOCR] human gut metagenome; human gut
9148
9072
-
Arg
ACG
[ENA]
¢þ
>WENV183697132
OUNJ010012209
[OUNJ] metagenome; soil
791
867
+
Arg
ACG
[ENA]
¢þ
>WENV170220326
CEPZ01144290
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
1
-
Arg
ACG
[ENA]
¢þ
>C181109000
CP024934
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
3111580
3111656
+
Arg
ACG
-
¡û
>C181109001
CP024934
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
3111725
3111801
+
Arg
ACG
-
¡û
>C181109094
CP024937
Betaproteobacteria
Paraburkholderia hospita mHSR1 [CP024937, CP024938, CP024939]
821356
821280
-
Arg
ACG
-
¡û
>C191005063
AP018786
Betaproteobacteria
Sutterella megalosphaeroides 6FBBBH3 [AP018786]
2397646
2397722
+
Arg
ACG
-
¡û
>C191005065
AP018786
Betaproteobacteria
Sutterella megalosphaeroides 6FBBBH3 [AP018786]
2409966
2410042
+
Arg
ACG
-
¡û
>C191005066
AP018786
Betaproteobacteria
Sutterella megalosphaeroides 6FBBBH3 [AP018786]
2410071
2410147
+
Arg
ACG
-
¡û
>W1910664466
MCAS01000005
Betaproteobacteria
Paraburkholderia fungorum ES3-20 [MCAS]
100934
101010
+
Arg
ACG
[ENA]
¡û
>W1910664467
MCAS01000005
Betaproteobacteria
Paraburkholderia fungorum ES3-20 [MCAS]
101099
101175
+
Arg
ACG
[ENA]
¡û
>W1910822038
MWMK01000007
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
109226
109150
-
Arg
ACG
[ENA]
¡û
>W1910822039
MWMK01000007
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
109070
108994
-
Arg
ACG
[ENA]
¡û
>W1911497934
OCSU01000002
Betaproteobacteria
Caballeronia arationis OK806 [OCSU]
2470339
2470415
+
Arg
ACG
[ENA]
¡û
>W1911497970
OCSV01000001
Betaproteobacteria
Burkholderia sp. YR290 [OCSV]
935677
935753
+
Arg
ACG
[ENA]
¡û
>W1911647501
QAJN01000014
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
92033
91957
-
Arg
ACG
[ENA]
¡û
>W1911647502
QAJN01000014
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
91702
91626
-
Arg
ACG
[ENA]
¡û
>W1911647503
QAJN01000014
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
91062
90986
-
Arg
ACG
[ENA]
¡û
>W1911775010
QXMG01000021
Betaproteobacteria
Caldimonas tepidiphila YIM 730274 [QXMG]
19110
19034
-
Arg
ACG
[ENA]
¡û
>W1810356698
PVNC01000017
Betaproteobacteria
Paraburkholderia sp. BL18I3N2 [PVNC]
106063
106139
+
Arg
ACG
[ENA]
¡û
>W1810356699
PVNC01000017
Betaproteobacteria
Paraburkholderia sp. BL18I3N2 [PVNC]
106219
106295
+
Arg
ACG
[ENA]
¡û
>W1810659060
QJJT01000016
Betaproteobacteria
Paraburkholderia caballeronis TNe-835 [QJJT]
16392
16468
+
Arg
ACG
[ENA]
¡û
>W1810659061
QJJT01000016
Betaproteobacteria
Paraburkholderia caballeronis TNe-835 [QJJT]
16539
16615
+
Arg
ACG
[ENA]
¡û
>C151070622
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
1093209
1093285
+
Arg
ACG
[Ensembl]
¡û
>W121033582
AHJE01000019
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
2264
2340
+
Arg
ACG
[ENA]
¡û
>W121033615
AHJE01000098
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
52645
52569
-
Arg
ACG
[ENA]
¡û
>W121033625
AHJE01000138
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
19315
19391
+
Arg
ACG
[ENA]
¡û
>W1610206027
FCNW02000001
Betaproteobacteria
Caballeronia humi [FCNW]
64301
64377
+
Arg
ACG
[ENA]
¡û
>W1610206028
FCNW02000001
Betaproteobacteria
Caballeronia humi [FCNW]
64475
64551
+
Arg
ACG
[ENA]
¡û
>W1710207320
FCNW02000001
Betaproteobacteria
Caballeronia humi [FCNW]
64301
64377
+
Arg
ACG
[ENA]
¡û
>W1710207321
FCNW02000001
Betaproteobacteria
Caballeronia humi [FCNW]
64475
64551
+
Arg
ACG
[ENA]
¡û
>W1710542869
FNZM01000008
Betaproteobacteria
Paraburkholderia tropica [FNZM]
228879
228955
+
Arg
ACG
[ENA]
¡û
>W1710595186
FSRU01000002
Betaproteobacteria
Paraburkholderia phenazinium [FSRU]
2237694
2237770
+
Arg
ACG
[ENA]
¡û
>W1710595187
FSRU01000002
Betaproteobacteria
Paraburkholderia phenazinium [FSRU]
2237856
2237932
+
Arg
ACG
[ENA]
¡û
>W1710608276
FXAT01000001
Betaproteobacteria
Paraburkholderia susongensis [FXAT]
1045485
1045561
+
Arg
ACG
[ENA]
¡û
>W1710608277
FXAT01000001
Betaproteobacteria
Paraburkholderia susongensis [FXAT]
1045639
1045715
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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