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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2104 (35 seq.)
>WENV180013672
FMSI01126134
[FMSI] soil metagenome; Soil
1
96
+
SeC
TCA
[ENA]
¢þ
>WENV180036785
FVAA010336917
[FVAA] soil metagenome; Soil
82
177
+
SeC
TCA
[ENA]
¢þ
>WENV181416159
OGCL01057416
[OGCL] hot springs metagenome; Hot spring water
469
374
-
SeC
TCA
[ENA]
¢þ
>WENV183746440
POYD01013217
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
290
385
+
SeC
TCA
[ENA]
¢þ
>WENV183746572
POYE01019127
[POYE] biofilm metagenome; steel pipe from biofilm reactor
280
185
-
SeC
TCA
[ENA]
¢þ
>C181114011
CP025149
Gammaproteobacteria
Stutzerimonas stutzeri SGAir0442 [CP025149]
186880
186785
-
SeC
TCA
-
¡û
>C181158346
CP027664
Gammaproteobacteria
Stutzerimonas stutzeri 1W1-1A [CP027664]
1623429
1623334
-
SeC
TCA
-
¡û
>C191206316
LR134319
Gammaproteobacteria
Stutzerimonas stutzeri NCTC10450 [LR134319]
4196843
4196938
+
Sec
TCA
-
¡û
>W142000588
AZSV01000051
Gammaproteobacteria
Pseudomonas sp. BAY1663 [AZSV]
30929
30834
-
seC
TCA
[ENA]
¡û
>W142000715
CCSF01000001
Gammaproteobacteria
Pseudomonas saudiphocaensis 20_BN [CCSF]
2875033
2874938
-
seC
TCA
[ENA]
¡û
>W1910743684
MHZJ01000061
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPHIGHO2_01_FULL_64_12 [MHZJ]
12740
12645
-
Sec
TCA
[ENA]
¡û
>W1910808467
MUEH01000011
Gammaproteobacteria
Stutzerimonas stutzeri KMS 55 [MUEH]
105475
105570
+
Sec
TCA
[ENA]
¡û
>W1911644225
PZYR01000016
Gammaproteobacteria
Stutzerimonas stutzeri AK6 [PZYR]
106595
106690
+
Sec
TCA
[ENA]
¡û
>W1810169401
PJJZ01000008
Gammaproteobacteria
Stutzerimonas stutzeri DSM 50227 [PJJZ]
4155
4250
+
Sec
TCA
[ENA]
¡û
>W1810224514
POUM01000006
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 44592 [POUM]
82023
82118
+
Sec
TCA
[ENA]
¡û
>W1810224932
POUT01000001
Gammaproteobacteria
Stutzerimonas stutzeri 24a75 [POUT]
427205
427300
+
Sec
TCA
[ENA]
¡û
>W1810686260
QLAB01000009
Gammaproteobacteria
Stutzerimonas stutzeri CM [QLAB]
73471
73566
+
Sec
TCA
[ENA]
¡û
>W1810898522
QUZY01000003
Gammaproteobacteria
Stutzerimonas stutzeri ATCC 17587 [QUZY]
503873
503968
+
Sec
TCA
[ENA]
¡û
>C152000037
CP007509
Gammaproteobacteria
Stutzerimonas stutzeri 19SMN4 [CP007509]
4458486
4458581
+
SeC
TCA
[Ensembl]
¡û
>C152000149
CP011854
Gammaproteobacteria
Stutzerimonas stutzeri SLG510A3-8 [CP011854]
256891
256796
-
SeC
TCA
[Ensembl]
¡û
>C11200026
CP002881
Gammaproteobacteria
Stutzerimonas stutzeri CGMCC 1.1803 [CP002881]
245749
245654
-
SeC
TCA
[Ensembl]
¡û
>C11200027
CP002622
Gammaproteobacteria
Stutzerimonas stutzeri DSM 4166 [CP002622]
246839
246744
-
SeC
TCA
[Ensembl]
¡û
>C122000023
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
235956
235861
-
SeC
TCA
[Ensembl]
¡û
>W122000227
ALJB01000066
Gammaproteobacteria
Stutzerimonas stutzeri T13 [ALJB]
219332
219237
-
seC
TCA
[ENA]
¡û
>W1620001669
LSVE01000034
Gammaproteobacteria
Stutzerimonas stutzeri [LSVE]
128747
128652
-
SeC
TCA
[ENA]
¡û
>W1720000981
FNHO01000001
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [FNHO]
151577
151672
+
SeC
TCA
[ENA]
¡û
>W1720002129
LSVE01000034
Gammaproteobacteria
Stutzerimonas stutzeri [LSVE]
128747
128652
-
SeC
TCA
[ENA]
¡û
>W1720002667
MCAL01000011
Gammaproteobacteria
Pseudomonas sp. K35 [MCAL]
2925
2830
-
SeC
TCA
[ENA]
¡û
>W1720002715
MDGV01000009
Gammaproteobacteria
Stutzerimonas stutzeri [MDGV]
306190
306285
+
SeC
TCA
[ENA]
¡û
>W1720002878
MHZI01000167
Gammaproteobacteria
Pseudomonadales bacterium GWC2_63_15 [MHZI]
2473
2568
+
SeC
TCA
[ENA]
¡û
>W1720003493
MWUI01000031
Gammaproteobacteria
Stutzerimonas stutzeri [MWUI]
54737
54642
-
SeC
TCA
[ENA]
¡û
>W1720003731
NCKS02000175
Gammaproteobacteria
Stutzerimonas stutzeri [NCKS]
1105
1010
-
SeC
TCA
[ENA]
¡û
>W1720003905
NFZU01000061
Gammaproteobacteria
Stutzerimonas stutzeri [NFZU]
10198
10293
+
SeC
TCA
[ENA]
¡û
>W132000033
AMVM01000013
Gammaproteobacteria
Stutzerimonas stutzeri B1SMN1 [AMVM]
74213
74308
+
seC
TCA
[ENA]
¡û
>W132000277
AUDU01000008
Gammaproteobacteria
Stutzerimonas azotifigens DSM 17556 [AUDU]
156180
156275
+
seC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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