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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210775 (92 seq.)
>W131044116
AMQH01000006
Bacillota
Clostridium tunisiense TJ [AMQH]
443010
442934
-
Asp
GTC
[ENA]
¡û
>W131044135
AMQH01000010
Bacillota
Clostridium tunisiense TJ [AMQH]
57680
57604
-
Asp
GTC
[ENA]
¡û
>W131044139
AMQH01000010
Bacillota
Clostridium tunisiense TJ [AMQH]
57345
57269
-
Asp
GTC
[ENA]
¡û
>W131044143
AMQH01000010
Bacillota
Clostridium tunisiense TJ [AMQH]
57012
56936
-
Asp
GTC
[ENA]
¡û
>W1711791409
MWIY01000012
Bacillota
Clostridium botulinum [MWIY]
96855
96779
-
Asp
GTC
[ENA]
¡û
>C171077674
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
3679508
3679584
+
Asp
GTC
-
¡û
>w025860
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
1286901
1286979
+
Asp
GTC
[ENA]
¡û
>WENV180346672
OBLN01212969
[OBLN] sediment metagenome; sediment
128
204
+
Asp
GTC
[ENA]
¢þ
>W141063925
APJS01000011
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
355
431
+
Asp
GTC
[ENA]
¡û
>W141082919
AUPA01000006
Bacillota
Clostridium sp. BL8 [AUPA]
77806
77882
+
Asp
GTC
[ENA]
¡û
>W141082969
AUPA01000113
Bacillota
Clostridium sp. BL8 [AUPA]
148
224
+
Asp
GTC
[ENA]
¡û
>WENV181226235
OFDK01000337
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
11267
11191
-
Asp
GTC
[ENA]
¢þ
>W141167939
AXUN02000135
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
47247
47171
-
Asp
GTC
[ENA]
¡û
>W141167941
AXUN02000135
Bacillota
Youngiibacter fragilis 232.1 [AXUN]
47048
46972
-
Asp
GTC
[ENA]
¡û
>C08003373
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
3271760
3271836
+
Asp
GTC
[Ensembl]
¡û
>W141265319
CCFF01000012
Bacillota
Clostridium culturomicium CL-6 [CCFF]
40482
40558
+
Asp
GTC
[ENA]
¡û
>W141265322
CCFF01000012
Bacillota
Clostridium culturomicium CL-6 [CCFF]
40778
40854
+
Asp
GTC
[ENA]
¡û
>W141265362
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
530418
530342
-
Asp
GTC
[ENA]
¡û
>W141265758
CCFK01000007
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
571425
571501
+
Asp
GTC
[ENA]
¡û
>W141265785
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
82988
83064
+
Asp
GTC
[ENA]
¡û
>W141265788
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83249
83325
+
Asp
GTC
[ENA]
¡û
>W141265791
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83510
83586
+
Asp
GTC
[ENA]
¡û
>W141265794
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
83771
83847
+
Asp
GTC
[ENA]
¡û
>W141265797
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84032
84108
+
Asp
GTC
[ENA]
¡û
>W141265800
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84293
84369
+
Asp
GTC
[ENA]
¡û
>W141265803
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84554
84630
+
Asp
GTC
[ENA]
¡û
>W141265806
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
84815
84891
+
Asp
GTC
[ENA]
¡û
>W141265809
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
85076
85152
+
Asp
GTC
[ENA]
¡û
>W141265812
CCFK01000014
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
85337
85413
+
Asp
GTC
[ENA]
¡û
>WENV182963237
OKWQ01000006
[OKWQ] human gut metagenome; stool
342918
342842
-
Asp
GTC
[ENA]
¢þ
>WENV182963377
OKWQ01000176
[OKWQ] human gut metagenome; stool
75
1
-
Asp
GTC
[ENA]
¢þ
>WENV183707901
PDWI01011340
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9673
9598
-
Asp
GTC
[ENA]
¢þ
>WENV183716016
PDWI01280000
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
658
583
-
Asp
GTC
[ENA]
¢þ
>WENV170015661
AZII01001626
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
189
265
+
Asp
GTC
[ENA]
¢þ
>WENV170656791
JTFO01044061
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
157
233
+
Asp
GTC
[ENA]
¢þ
>WENV170687765
LFRM01209833
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
31087
31011
-
Asp
GTC
[ENA]
¢þ
>WENV170725377
LSQX01340646
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1092
1168
+
Asp
GTC
[ENA]
¢þ
>C191010796
CP013707
Bacillota
Clostridium botulinum F634 [CP013707]
3813275
3813199
-
Asp
GTC
-
¡û
>C191184248
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
1612192
1612268
+
Asp
GTC
-
¡û
>C191184260
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3635854
3635778
-
Asp
GTC
-
¡û
>C191184263
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3635551
3635475
-
Asp
GTC
-
¡û
>C191222095
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2687129
2687053
-
Asp
GTC
-
¡û
>C191222099
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2686779
2686703
-
Asp
GTC
-
¡û
>C191222103
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
2686426
2686350
-
Asp
GTC
-
¡û
>W141702244
JMLJ01000007
Bacillota
Clostridium hydrogeniformans DSM 21757 [JMLJ]
106555
106631
+
Asp
GTC
[ENA]
¡û
>W141702271
JMLJ01000013
Bacillota
Clostridium hydrogeniformans DSM 21757 [JMLJ]
238
314
+
Asp
GTC
[ENA]
¡û
>W141702282
JMLJ01000018
Bacillota
Clostridium hydrogeniformans DSM 21757 [JMLJ]
75356
75432
+
Asp
GTC
[ENA]
¡û
>W141732456
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
325914
325838
-
Asp
GTC
[ENA]
¡û
>W141732459
JNKC01000004
Bacillota
Proteiniclasticum ruminis DSM 24773 [JNKC]
325647
325571
-
Asp
GTC
[ENA]
¡û
>W141806508
JPMD01000063
Bacillota
Clostridium sulfidigenes [JPMD]
3877
3801
-
Asp
GTC
[ENA]
¡û
>W141806511
JPMD01000064
Bacillota
Clostridium sulfidigenes [JPMD]
7288
7364
+
Asp
GTC
[ENA]
¡û
>W141806528
JPMD01000075
Bacillota
Clostridium sulfidigenes [JPMD]
334
410
+
Asp
GTC
[ENA]
¡û
>W141820432
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
1124578
1124502
-
Asp
GTC
[ENA]
¡û
>W141820436
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
1124227
1124151
-
Asp
GTC
[ENA]
¡û
>W141820456
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
17316
17240
-
Asp
GTC
[ENA]
¡û
>W1910213005
FMJL01000002
Bacillota
Clostridium sp. N3C [FMJL]
73956
74032
+
Asp
GTC
[ENA]
¡û
>W1910213055
FMJL01000043
Bacillota
Clostridium sp. N3C [FMJL]
17791
17867
+
Asp
GTC
[ENA]
¡û
>C09103286
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
3203262
3203338
+
Asp
GTC
[Ensembl]
¡û
>W1910498540
FXWX01000023
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
84567
84643
+
Asp
GTC
[ENA]
¡û
>W1910498544
FXWX01000023
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
84916
84992
+
Asp
GTC
[ENA]
¡û
>W1910498576
FXWX01000026
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
422711
422635
-
Asp
GTC
[ENA]
¡û
>W1910501427
FYAM01000024
Bacillota
Clostridium sp. BSD9I1 [FYAM]
264329
264253
-
Asp
GTC
[ENA]
¡û
>W1910501436
FYAM01000025
Bacillota
Clostridium sp. BSD9I1 [FYAM]
43486
43562
+
Asp
GTC
[ENA]
¡û
>W1910637540
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
63256
63180
-
Asp
GTC
[ENA]
¡û
>W1910637543
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
62995
62919
-
Asp
GTC
[ENA]
¡û
>W1911491726
OAOI01000077
Bacillota
Clostridium thiosulfatireducens [OAOI]
47366
47290
-
Asp
GTC
[ENA]
¡û
>W1911491751
OAOI01000167
Bacillota
Clostridium thiosulfatireducens [OAOI]
10747
10671
-
Asp
GTC
[ENA]
¡û
>W1510060563
CCXK01000012
Bacillota
Clostridium culturomicium CL-6 [CCXK]
40482
40558
+
Asp
GTC
[ENA]
¡û
>W1510060566
CCXK01000012
Bacillota
Clostridium culturomicium CL-6 [CCXK]
40778
40854
+
Asp
GTC
[ENA]
¡û
>W1510060606
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
530418
530342
-
Asp
GTC
[ENA]
¡û
>W1510755142
CYSK01000014
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
548168
548244
+
Asp
GTC
[ENA]
¡û
>W1510755165
CYSK01000016
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
173446
173370
-
Asp
GTC
[ENA]
¡û
>W1510755168
CYSK01000016
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
173163
173087
-
Asp
GTC
[ENA]
¡û
>W1511186991
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
30
106
+
Asp
GTC
[ENA]
¡û
>W1511186995
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
372
448
+
Asp
GTC
[ENA]
¡û
>W1511187003
JMFY01000011
Bacillota
Clostridium sp. HMP27 [JMFY]
54234
54310
+
Asp
GTC
[ENA]
¡û
>W1610030366
AYSO01000014
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
4884
4960
+
Asp
GTC
[ENA]
¡û
>W1610030385
AYSO01000018
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
188888
188964
+
Asp
GTC
[ENA]
¡û
>W1710027489
AYSO01000014
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
4884
4960
+
Asp
GTC
[ENA]
¡û
>W1710027508
AYSO01000018
Bacillota
Clostridium argentinense CDC 2741 [AYSO]
188888
188964
+
Asp
GTC
[ENA]
¡û
>W1710518397
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
35886
35962
+
Asp
GTC
[ENA]
¡û
>W1710518400
FNDZ01000003
Bacillota
Proteiniclasticum ruminis [FNDZ]
36153
36229
+
Asp
GTC
[ENA]
¡û
>W1710538282
FNUK01000029
Bacillota
Caloramator fervidus [FNUK]
16385
16309
-
Asp
GTC
[ENA]
¡û
>W1710556586
FOKI01000005
Bacillota
Clostridium frigidicarnis [FOKI]
155040
154964
-
Asp
GTC
[ENA]
¡û
>W1710556628
FOKI01000083
Bacillota
Clostridium frigidicarnis [FOKI]
4073
3997
-
Asp
GTC
[ENA]
¡û
>W1710570848
FOVK01000017
Bacillota
Proteiniclasticum ruminis [FOVK]
163
87
-
Asp
GTC
[ENA]
¡û
>W1710570853
FOVK01000025
Bacillota
Proteiniclasticum ruminis [FOVK]
11052
10976
-
Asp
GTC
[ENA]
¡û
>W1710586758
FQXL01000034
Bacillota
Clostridium magnum DSM 2767 [FQXL]
156
232
+
Asp
GTC
[ENA]
¡û
>W1710586764
FQXL01000040
Bacillota
Clostridium magnum DSM 2767 [FQXL]
37278
37202
-
Asp
GTC
[ENA]
¡û
>W1710586814
FQXM01000015
Bacillota
Clostridium grantii DSM 8605 [FQXM]
94
170
+
Asp
GTC
[ENA]
¡û
>W1710586833
FQXM01000029
Bacillota
Clostridium grantii DSM 8605 [FQXM]
142
66
-
Asp
GTC
[ENA]
¡û
>W1710586847
FQXM01000046
Bacillota
Clostridium grantii DSM 8605 [FQXM]
11291
11367
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK