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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211214 (88 seq.)
>W1710865369
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
151921
151997
+
Met
CAT
[ENA]
¡û
>W1710866648
LMHQ01000012
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
198895
198971
+
Met
CAT
[ENA]
¡û
>W1710868489
LMJC01000030
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
171571
171495
-
Met
CAT
[ENA]
¡û
>W1710868723
LMJH01000010
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
175912
175836
-
Met
CAT
[ENA]
¡û
>W1710872418
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
112204
112280
+
Met
CAT
[ENA]
¡û
>W1710872598
LMMC01000012
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
332889
332965
+
Met
CAT
[ENA]
¡û
>W1710877000
LMPT01000012
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
405310
405386
+
Met
CAT
[ENA]
¡û
>W1710892924
LNEG01000068
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
15051
15127
+
Met
CAT
[ENA]
¡û
>W1711073165
LSIH01000196
Betaproteobacteria
Acidovorax delafieldii [LSIH]
16187
16263
+
Met
CAT
[ENA]
¡û
>W1711384820
MEDK01000087
Betaproteobacteria
Acidovorax sp. SCN 65-108 [MEDK]
30688
30612
-
Met
CAT
[ENA]
¡û
>W1711384881
MEDM01000108
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
13170
13246
+
Met
CAT
[ENA]
¡û
>W1711394783
MERR01000019
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
4025
3949
-
Met
CAT
[ENA]
¡û
>W1711501315
MKRM01000041
Betaproteobacteria
Acidovorax sp. 65-7 [MKRM]
497
421
-
Met
CAT
[ENA]
¡û
>W1711503000
MKTF01000039
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
166546
166622
+
Met
CAT
[ENA]
¡û
>W131224237
AUCQ01000014
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
128394
128470
+
Met
CAT
[ENA]
¡û
>W131229597
AUGX01000027
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
35696
35772
+
Met
CAT
[ENA]
¡û
>C017331
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1348329
1348405
+
Met
CAT
[Ensembl]
¡û
>C171049713
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
691385
691309
-
Met
CAT
-
¡û
>C171118068
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
3145657
3145581
-
Met
CAT
-
¡û
>C171118119
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
3316284
3316208
-
Met
CAT
-
¡û
>C171118143
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
819222
819298
+
Met
CAT
-
¡û
>C171118221
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
3262017
3261941
-
Met
CAT
-
¡û
>WENV180283550
OBID01000672
[OBID] metagenome; sludge
4566
4642
+
Ile2
CAT
[ENA]
¢þ
>WENV181032119
ODXK01052390
[ODXK] human metagenome; G_DNA_Stool
72
148
+
Ile2
CAT
[ENA]
¢þ
>WENV181311453
OFJB01002272
[OFJB] sludge metagenome; sludge
4856
4932
+
Ile2
CAT
[ENA]
¢þ
>WENV181361144
OFNH01000802
[OFNH] sediment metagenome; Lake sediment
187
111
-
Ile2
CAT
[ENA]
¢þ
>WENV181363121
OFOS01000039
[OFOS] sediment metagenome; Lake sediment
16461
16537
+
Ile2
CAT
[ENA]
¢þ
>WENV181364501
OFOW01000247
[OFOW] sediment metagenome; Lake sediment
1679
1755
+
Ile2
CAT
[ENA]
¢þ
>WENV181364548
OFOY01000027
[OFOY] sediment metagenome; Lake sediment
22220
22296
+
Ile2
CAT
[ENA]
¢þ
>WENV181364662
OFPA01000045
[OFPA] sediment metagenome; Lake sediment
18107
18031
-
Ile2
CAT
[ENA]
¢þ
>WENV181364841
OFPE01001906
[OFPE] sediment metagenome; Lake sediment
665
741
+
Ile2
CAT
[ENA]
¢þ
>WENV181365150
OFPK01000037
[OFPK] sediment metagenome; Lake sediment
22220
22296
+
Ile2
CAT
[ENA]
¢þ
>WENV181365295
OFPN01000051
[OFPN] sediment metagenome; Lake sediment
22220
22296
+
Ile2
CAT
[ENA]
¢þ
>WENV181365305
OFPO01000007
[OFPO] sediment metagenome; Lake sediment
27353
27429
+
Ile2
CAT
[ENA]
¢þ
>WENV181365408
OFPQ01000681
[OFPQ] sediment metagenome; Lake sediment
420
496
+
Ile2
CAT
[ENA]
¢þ
>WENV181368079
OFQG01003719
[OFQG] freshwater metagenome; Freshwater Lake
40
116
+
Ile2
CAT
[ENA]
¢þ
>WENV181415019
OGCL01003169
[OGCL] hot springs metagenome; Hot spring water
6184
6260
+
Ile2
CAT
[ENA]
¢þ
>C08007645
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1348329
1348405
+
Met
CAT
[Ensembl]
¡û
>W141278754
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
1621011
1621087
+
Met
CAT
[ENA]
¡û
>WENV183703924
PDVJ01069823
[PDVJ] alkali sediment metagenome; glacial lake sediment
314
238
-
Ile2
CAT
[ENA]
¢þ
>WENV183743506
PJUJ01003033
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1166
1242
+
Ile2
CAT
[ENA]
¢þ
>WENV183744863
PJUL01000470
[PJUL] feces metagenome; Chicken feces enriched on filter paper
11865
11941
+
Ile2
CAT
[ENA]
¢þ
>WENV183745093
PJUL01002215
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3552
3476
-
Ile2
CAT
[ENA]
¢þ
>WENV170557979
CXWL01044808
[CXWL] groundwater metagenome; biofilm material
5347
5271
-
Met
CAT
[ENA]
¢þ
>WENV170639842
JFJP01009677
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3950
4026
+
Met
CAT
[ENA]
¢þ
>C181019008
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
2305094
2305018
-
Met
CAT
-
¡û
>C181158440
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
3290965
3290889
-
Met
CAT
-
¡û
>W141565123
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
2926250
2926174
-
Met
CAT
[ENA]
¡û
>W09101634
AAFQ02000010
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
76678
76602
-
Met
CAT
[ENA]
¡û
>W09117918
ACCM01000001
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
513317
513241
-
Met
CAT
[ENA]
¡û
>W1910179191
BJHU01000021
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
115997
115921
-
Met
CAT
[ENA]
¡û
>W1910699764
MERV01000022
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
2299
2223
-
Met
CAT
[ENA]
¡û
>W1910699815
MERW01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
29766
29690
-
Met
CAT
[ENA]
¡û
>W1910699973
MESB01000303
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
30089
30013
-
Met
CAT
[ENA]
¡û
>W1910700280
MESJ01000034
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
24373
24449
+
Met
CAT
[ENA]
¡û
>W1911114306
NOIG01000004
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
235505
235581
+
Met
CAT
[ENA]
¡û
>C09104038
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
876017
876093
+
Met
CAT
[Ensembl]
¡û
>W1911647682
QAJR01000003
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
111527
111451
-
Met
CAT
[ENA]
¡û
>W1810071494
PEET01000001
Betaproteobacteria
Acidovorax sp. 59 [PEET]
3469296
3469220
-
Met
CAT
[ENA]
¡û
>W1810089003
PGEJ01000018
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
1105
1029
-
Met
CAT
[ENA]
¡û
>W1810173324
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
1484549
1484625
+
Met
CAT
[ENA]
¡û
>SRA1004240
SRR002328.217425
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
217
141
-
Met
CAT
[SRA]
>SRA1004318
SRR002328.273095
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
87
-
Met
CAT
[SRA]
>W1810474440
QAIH01000225
Betaproteobacteria
Acidovorax sp. HMWF029 [QAIH]
45814
45738
-
Met
CAT
[ENA]
¡û
>W1810474677
QAIM01000128
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
3059
2983
-
Met
CAT
[ENA]
¡û
>W1810513824
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
4297664
4297740
+
Met
CAT
[ENA]
¡û
>W1810683042
QKVP01000002
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
737821
737745
-
Met
CAT
[ENA]
¡û
>W1810697094
QLTU01000061
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
4736
4812
+
Met
CAT
[ENA]
¡û
>W1810750684
QOZT01000013
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
26826
26750
-
Met
CAT
[ENA]
¡û
>W1810759932
QPJU01000004
Betaproteobacteria
Extensimonas vulgaris DSM 100911 [QPJU]
201375
201451
+
Met
CAT
[ENA]
¡û
>C11100622
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
1000521
1000597
+
Met
CAT
[Ensembl]
¡û
>W1510766096
JANU01000042
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
34741
34665
-
Met
CAT
[ENA]
¡û
>W1511390749
JSYI01000043
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
110924
111000
+
Met
CAT
[ENA]
¡û
>W11156576
AFBH01000010
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
578366
578442
+
Met
CAT
[ENA]
¡û
>W1610042827
BAZJ01000054
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
4726
4802
+
Met
CAT
[ENA]
¡û
>C131008660
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
1081035
1081111
+
Met
CAT
[Ensembl]
¡û
>W1610623701
LHUP01000173
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
57705
57629
-
Met
CAT
[ENA]
¡û
>W1610727715
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
151921
151997
+
Met
CAT
[ENA]
¡û
>W1610728994
LMHQ01000012
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
198895
198971
+
Met
CAT
[ENA]
¡û
>W1610730835
LMJC01000030
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
171571
171495
-
Met
CAT
[ENA]
¡û
>W1610731069
LMJH01000010
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
175912
175836
-
Met
CAT
[ENA]
¡û
>W1610734764
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
112204
112280
+
Met
CAT
[ENA]
¡û
>W1610734944
LMMC01000012
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
332889
332965
+
Met
CAT
[ENA]
¡û
>W1610739346
LMPT01000012
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
405310
405386
+
Met
CAT
[ENA]
¡û
>W1610753190
LNEG01000068
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
15051
15127
+
Met
CAT
[ENA]
¡û
>W1610912470
LSIH01000196
Betaproteobacteria
Acidovorax delafieldii [LSIH]
16187
16263
+
Met
CAT
[ENA]
¡û
>W1710039987
BAZJ01000054
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
4726
4802
+
Met
CAT
[ENA]
¡û
>W1710754791
LHUP01000173
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
57705
57629
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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